Uses of Interface org.biojava.bio.program.ssaha.SequenceStreamer (biojava-legacy 1.9.7 API)

Packages that use SequenceStreamer

Package

Description

org.biojava.bio.program.ssaha

SSAHA sequence searching API.

Uses of SequenceStreamer in org.biojava.bio.program.ssaha

Classes in org.biojava.bio.program.ssaha that implement SequenceStreamer

Modifier and Type

Class

Description

static class

SequenceStreamer.FileStreamer

static class

SequenceStreamer.SequenceDBStreamer

Methods in org.biojava.bio.program.ssaha with parameters of type SequenceStreamer

Modifier and Type

Method

Description

DataStore

CompactedDataStoreFactory.buildDataStore(File storeFile, SequenceStreamer streamer, Packing packing, int wordLength, int stepSize, int threshold)