HitStAXHandler (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

org.biojava.bio.program.ssbind.HitStAXHandler

All Implemented Interfaces:: StAXContentHandler

public class HitStAXHandler extends SeqSimilarityStAXHandler

AlignmentStAXHandler handles the Hit element of BioJava BlastLike XML.

Since:: 1.3
Author:: Keith James

Field Summary

Fields

Modifier and Type

Field

Description

static final StAXHandlerFactory

HIT_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
ssContext
Method Summary

Modifier and Type

Method

Description

protected void

handleEndElement(String nsURI, String localName, String qName)

protected void

handleStartElement(String nsURI, String localName, String qName, Attributes attrs)

Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
addHandler, endElement, startElement

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- HIT_HANDLER_FACTORY
  
  public static final StAXHandlerFactory HIT_HANDLER_FACTORY
Method Details
- handleStartElement
  
  protected void handleStartElement(String nsURI, String localName, String qName, Attributes attrs) throws SAXException
  
  Overrides:
  
  handleStartElement in class SeqSimilarityStAXHandler
  
  Throws:
  
  SAXException
- handleEndElement
  
  protected void handleEndElement(String nsURI, String localName, String qName) throws SAXException
  
  Overrides:
  
  handleEndElement in class SeqSimilarityStAXHandler
  
  Throws:
  
  SAXException