SeqSimilarityStAXHandler (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

All Implemented Interfaces:: StAXContentHandler

Direct Known Subclasses:: AlignmentStAXHandler, HeaderStAXHandler, HitStAXHandler, HSPStAXHandler, HSPSummaryStAXHandler

public class SeqSimilarityStAXHandler extends StAXContentHandlerBase

SeqSimilarityStAXHandler is a base class for creating modular StAX handlers which send callbacks to a SeqSimilarityStAXAdapter.

Since:: 1.3
Author:: Keith James

Field Summary

Fields

Modifier and Type

Field

Description

protected SeqSimilarityStAXAdapter

ssContext
Constructor Summary

Constructors

Constructor

Description

SeqSimilarityStAXHandler(SeqSimilarityStAXAdapter ssContext)

Creates a new SeqSimilarityStAXHandler which simply maintains a list of StAXHandlerBindings and delegates to any suitable StAXContentHandler bound by one of them.
Method Summary

Modifier and Type

Method

Description

protected void

addHandler(ElementRecognizer recognizer, StAXHandlerFactory factory)

void

endElement(String nsURI, String localName, String qName, StAXContentHandler handler)

protected void

handleEndElement(String nsURI, String localName, String qName)

protected void

handleStartElement(String nsURI, String localName, String qName, Attributes attrs)

void

startElement(String nsURI, String localName, String qName, Attributes attrs, DelegationManager dm)

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- ssContext
  
  protected SeqSimilarityStAXAdapter ssContext
Constructor Details
- SeqSimilarityStAXHandler
  
  public SeqSimilarityStAXHandler(SeqSimilarityStAXAdapter ssContext)
  
  Creates a new SeqSimilarityStAXHandler which simply maintains a list of StAXHandlerBindings and delegates to any suitable StAXContentHandler bound by one of them.
Method Details
- startElement
  
  public void startElement(String nsURI, String localName, String qName, Attributes attrs, DelegationManager dm) throws SAXException
  
  Specified by:
  
  startElement in interface StAXContentHandler
  
  Overrides:
  
  startElement in class StAXContentHandlerBase
  
  Throws:
  
  SAXException
- endElement
  
  public void endElement(String nsURI, String localName, String qName, StAXContentHandler handler) throws SAXException
  
  Specified by:
  
  endElement in interface StAXContentHandler
  
  Overrides:
  
  endElement in class StAXContentHandlerBase
  
  Throws:
  
  SAXException
- addHandler
  
  protected void addHandler(ElementRecognizer recognizer, StAXHandlerFactory factory)
- handleStartElement
  
  protected void handleStartElement(String nsURI, String localName, String qName, Attributes attrs) throws SAXException
  
  Throws:
  
  SAXException
- handleEndElement
  
  protected void handleEndElement(String nsURI, String localName, String qName) throws SAXException
  
  Throws:
  
  SAXException