Uses of Interface
org.biojava.bio.program.tagvalue.TagValueListener
Packages that use TagValueListener
Package
Description
Databases of generic structured data (annotation) objects.
Experimental parsers using the tagvalue framework.
Process files as streams of records, each with tags with values.
Objects for representing Unigene clusters.
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Uses of TagValueListener in org.biojava.bio.annodb
Methods in org.biojava.bio.annodb with parameters of type TagValueListenerModifier and TypeMethodDescriptionIndexedAnnotationDB.ParserListenerFactory.getParserListener(TagValueListener listener) Get the ParserListener for a TagValueListener.IndexedAnnotationDB.StaticMethodRPFactory.getParserListener(TagValueListener tvl) -
Uses of TagValueListener in org.biojava.bio.program.formats
Methods in org.biojava.bio.program.formats with parameters of type TagValueListenerModifier and TypeMethodDescriptionEmbl.getParserListener(TagValueListener listener) Enzyme.getParserListener(TagValueListener listener) Format.getParserListener(TagValueListener listener) Retrieve a ParserListener pair for the format that will pass all events on to a listener.Ligand.Compound.getParserListener(TagValueListener listener) Ligand.Enzyme.getParserListener(TagValueListener listener) Ligand.Reaction.getParserListener(TagValueListener listener) Swissprot.getParserListener(TagValueListener listener) -
Uses of TagValueListener in org.biojava.bio.program.tagvalue
Subinterfaces of TagValueListener in org.biojava.bio.program.tagvalueModifier and TypeInterfaceDescriptioninterfaceInterface for TagValueListeners that wrap other TagValueListenersClasses in org.biojava.bio.program.tagvalue that implement TagValueListenerModifier and TypeClassDescriptionclassAn abstract TagValueWrapper that does nothing!classJoins multipel values into single values.classBuilds an Annotation tree from TagValue events using an AnnotationType to work out which fields are of what type.classA simple listener that just echoes events back to the console.classListens to tag-value events and passes on indexing events to an IndexStore.classListens to tag-value events and passes on indexing events to an IndexStore.classPartician multiple values for a tag into their own tag groups.classclassHelper class to wrap one TagValueListener inside another one.classThis class implements a state machine for parsing events from the Parser class.classa basic listener for a State.classPushes a new parser and listener, or delegate to a listener depending on the tag.classSilently drop all tags except those specified, and pass the rest onto a delegate.classRename tags using a TagMapper.classIntercept the values associated with some tags and change them systematically.Fields in org.biojava.bio.program.tagvalue declared as TagValueListenerMethods in org.biojava.bio.program.tagvalue that return TagValueListenerModifier and TypeMethodDescriptionAbstractWrapper.getDelegate()SimpleTagValueWrapper.getDelegate()StateMachine.getDelegate()TagValueWrapper.getDelegate()get listener to which all calls will be delegatedParserListener.getListener()getListenerreturns the listener of the pair.StateMachine.BasicState.getListener()return the TagValueListener assigned to this State.StateMachine.State.getListener()TagDelegator.getListener(Object tag) Methods in org.biojava.bio.program.tagvalue with parameters of type TagValueListenerModifier and TypeMethodDescriptionstatic final ParserListenerFormats.createEmblParserListener(TagValueListener listener) static final ParserListenerFormats.createSwissprotParserListener(TagValueListener listener) voidTagValueContext.pushParser(TagValueParser subParser, TagValueListener subListener) Push a parser and listener pair onto the parser stack.booleanParser.read(BufferedReader reader, TagValueParser parser, TagValueListener listener) voidAbstractWrapper.setDelegate(TagValueListener delegate) voidSimpleTagValueWrapper.setDelegate(TagValueListener delegate) voidStateMachine.setDelegate(TagValueListener delegate) TagValueWrapper interfacevoidTagValueWrapper.setDelegate(TagValueListener delegate) set listener to which all calls will be delegatedvoidStateMachine.BasicState.setListener(TagValueListener listener) set a TagValueListener for this State.voidTagDelegator.setListener(Object tag, TagValueListener listener) voidTagDelegator.setParserListener(Object tag, TagValueParser parser, TagValueListener listener) Constructors in org.biojava.bio.program.tagvalue with parameters of type TagValueListenerModifierConstructorDescriptionAggregator(TagValueListener listener, BoundaryFinder observer, String joiner) BasicState(String label, TagValueListener listener) when this constructor is used, a fixed listener is used with this state.MultiTagger(TagValueListener listener, BoundaryFinder observer) ParserListener(TagValueParser parser, TagValueListener listener) Creates a newParserListenerinstance.RegexFieldFinder(TagValueListener delegate, Pattern pattern, String[] tags, boolean inLine) Creates a new RegexFiledFinder.SimpleTagValueWrapper(TagValueListener delegate) Build a SimpleTagValueWrapper that will forward everything to a delegate.TagDelegator(TagValueListener delegate) Create a new TagDropper that will pass on all retained tags and values to tvl.TagRenamer(TagValueListener delegate, PropertyChanger mapper) Build a new TagRenamer with a delegate and mapper.ValueChanger(TagValueListener delegate) ValueChanger(TagValueListener delegate, ChangeTable changeTable) Create a new changer that will pass the modified event stream to a delegate. -
Uses of TagValueListener in org.biojava.bio.program.unigene
Methods in org.biojava.bio.program.unigene with parameters of type TagValueListenerModifier and TypeMethodDescriptionstatic ParserListenerUnigeneTools.buildDataParser(TagValueListener listener) Generate a tag-value parser for unigene data files that will pass all parsing events on to your listener.static ParserListenerUnigeneTools.buildLibInfoParser(TagValueListener listener) Generate a tag-value parser for the library info unigene files.