Package org.biojava.bio.program.xff
Class XFFTools
java.lang.Object
org.biojava.bio.program.xff.XFFTools
Common functionality for manipulating XFF.
- Author:
- Matthew Pocock
-
Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic voidannotateXFF(File xffFile, Sequence sequence) static voidannotateXFF(File xffFile, Sequence sequence, Annotation ann) static Sequencestatic SequencereadXFF(File xffFile, String seqID, FiniteAlphabet alpha) static voidwriteXFF(File xffFile, FeatureHolder features) static voidwriteXFF(PrintWriter xffPR, FeatureHolder features)
-
Field Details
-
XFF_NS
- See Also:
-
XFF_BIOJAVA_NS
- See Also:
-
-
Constructor Details
-
XFFTools
public XFFTools()
-
-
Method Details
-
annotateXFF
public static void annotateXFF(File xffFile, Sequence sequence) throws IOException, SAXException, BioException - Throws:
IOExceptionSAXExceptionBioException
-
annotateXFF
public static void annotateXFF(File xffFile, Sequence sequence, Annotation ann) throws IOException, SAXException, BioException - Throws:
IOExceptionSAXExceptionBioException
-
readXFF
public static Sequence readXFF(File xffFile, String seqID, FiniteAlphabet alpha) throws IOException, SAXException, BioException - Throws:
IOExceptionSAXExceptionBioException
-
readXFF
public static Sequence readXFF(File xffFile, String seqID) throws IOException, SAXException, BioException - Throws:
IOExceptionSAXExceptionBioException
-
writeXFF
- Throws:
IOException
-
writeXFF
- Throws:
IOException
-