Package org.biojava.bio.proteomics

package org.biojava.bio.proteomics
Utilities to aid in performing various physical analysis of proteins.
  • Classes
    Class
    Description
    Digest
    This class contains methods for calculating the results of proteolytic digestion of a protein sequence this class is not designed to be thread safe
    IsoelectricPointCalc
    Class that computes isoelectric point for denaturated proteins.
    MassCalc
    MassCalc calculates the mass of peptides which for our purposes are SymbolLists which contain Symbolsfrom the protein Alphabet.
    Protease
    The protease class stores parameters needed by Digest to digest a protein sequence.
    ProteaseManager
    Registry and utility methods for Proteases.
    StructureTools
    Simple access to protein seccondary structure assignments.