FeatureHolderUtils (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.bio.seq.FeatureHolderUtils

public class FeatureHolderUtils extends Object

This class intendes to provide some FeatureHolder utilities. Currently it is mainly providing set operators.

Author:: Markus Brosch (markus[at]brosch[dot]cc)

Constructor Summary

Constructors

Constructor

Description

FeatureHolderUtils()
Method Summary

Modifier and Type

Method

Description

static Set

featureHolderAsSet(FeatureHolder fh)

Returns a FeatureHolder as a Set of Features

static FeatureHolder

intersect(FeatureHolder fh1, FeatureHolder fh2)

Operator: Intersect FeatureHolder1 with FeatureHolder2

static FeatureHolder

not(FeatureHolder fh1, FeatureHolder fh2)

Operator: FeatureHolder 1 NOT FeatureHolder2

static FeatureHolder

union(FeatureHolder fh1, FeatureHolder fh2)

Operator: Union of FeatureHolder1 and FeatureHolder2

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- FeatureHolderUtils
  
  public FeatureHolderUtils()
Method Details
- union
  
  public static FeatureHolder union(FeatureHolder fh1, FeatureHolder fh2) throws ChangeVetoException
  
  Operator: Union of FeatureHolder1 and FeatureHolder2
  
  Parameters:
  
  fh1 - FeatureHolder1
  
  fh2 - FeatureHolder2
  
  Returns:
  
  Union of fh1 and fh2 (corresponds to logical OR)
  
  Throws:
  
  ChangeVetoException
- intersect
  
  public static FeatureHolder intersect(FeatureHolder fh1, FeatureHolder fh2) throws ChangeVetoException
  
  Operator: Intersect FeatureHolder1 with FeatureHolder2
  
  Parameters:
  
  fh1 - FeatureHolder1
  
  fh2 - FeatureHolder2
  
  Returns:
  
  Intersection of fh1 and fh2 (corresponds to logical AND)
  
  Throws:
  
  ChangeVetoException
- not
  
  public static FeatureHolder not(FeatureHolder fh1, FeatureHolder fh2) throws ChangeVetoException
  
  Operator: FeatureHolder 1 NOT FeatureHolder2
  
  Parameters:
  
  fh1 - FeatureHolder1
  
  fh2 - FeatureHolder2
  
  Returns:
  
  Set of fh1 without any feature of fh2 (Not)
  
  Throws:
  
  ChangeVetoException
- featureHolderAsSet
  
  public static Set featureHolderAsSet(FeatureHolder fh)
  
  Returns a FeatureHolder as a Set of Features
  
  Parameters:
  
  fh - FeatureHolder you want to have as a Set
  
  Returns:
  
  Set of FeatureHoler fh