Uses of Interface
org.biojava.bio.seq.GappedSequence
Packages that use GappedSequence
Package
Description
Classes to generate and describe sequence alignments.
Classes and interfaces for defining biological sequences and informatics
objects.
Standard in-memory implementations of
Sequence and
Feature.-
Uses of GappedSequence in org.biojava.bio.alignment
Methods in org.biojava.bio.alignment that return GappedSequenceModifier and TypeMethodDescriptionAlignmentPair.getQuery()Return the query sequence as a gapped sequence.AlignmentPair.getSubject()Return the subject sequence as a gapped sequence. -
Uses of GappedSequence in org.biojava.bio.seq
Methods in org.biojava.bio.seq that return GappedSequenceModifier and TypeMethodDescriptionstatic GappedSequenceDNATools.createGappedDNASequence(String dna, String name) Get a new dna as a GappedSequencestatic GappedSequenceProteinTools.createGappedProteinSequence(String theProtein, String name) Get a new protein as a GappedSequencestatic GappedSequenceSequenceTools.gappedView(Sequence seq) Create a new gapped sequence for a sequence. -
Uses of GappedSequence in org.biojava.bio.seq.impl
Classes in org.biojava.bio.seq.impl that implement GappedSequenceModifier and TypeClassDescriptionclassSimple implementation of GappedSequence.Constructors in org.biojava.bio.seq.impl with parameters of type GappedSequence