Uses of Interface
org.biojava.bio.seq.OptimizableFilter
Packages that use OptimizableFilter
Package
Description
Graphical displays of biological sequences and associated annotations.
Classes and interfaces for defining biological sequences and informatics
objects.
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Uses of OptimizableFilter in org.biojava.bio.gui.sequence
Methods in org.biojava.bio.gui.sequence with parameters of type OptimizableFilterModifier and TypeMethodDescriptionvoidAbstractBeadRenderer.removeDelegateRenderer(OptimizableFilter filter) removeDelegateRendererremoves any association of the givenOptimizableFilterwith aBeadFeatureRenderer.voidAbstractBeadRenderer.setDelegateRenderer(OptimizableFilter filter, BeadFeatureRenderer renderer) setDelegateRendererassociates anOptimizableFilterwith aBeadFeatureRenderer.voidBeadFeatureRenderer.setDelegateRenderer(OptimizableFilter filter, BeadFeatureRenderer renderer) setDelegateRendererassociates anOptimizableFilterwith aBeadFeatureRenderer.voidRectangularImapRenderer.setDelegateRenderer(OptimizableFilter filter, BeadFeatureRenderer renderer) setDelegateRendererfor the specified filter. -
Uses of OptimizableFilter in org.biojava.bio.seq
Classes in org.biojava.bio.seq that implement OptimizableFilterModifier and TypeClassDescriptionstatic final classRetrieve features that contain a given annotation, and that the set of values contains the value given.static classFilter by applying a nestedFeatureFilterto all ancestor features.static final classRetrieve features that contain a given annotation with a given value.static classA filter that returns all features that have an annotation bundle that is of a given annotation type.static classFilter by applying a nestedFeatureFilterto the child features.static final classFilter which accepts only those filters which are an instance of a specific Java classstatic final classAccepts features which are ComponentFeatures and have acomponentSequenceNameproperty of the specified value.static classFilter by applying a nestedFeatureFilterto all descendant features.static final classAccept only features which are equal to the specified featurestatic final classByPairwiseScoreis used to filterSimilarityPairFeatures by their score.static classFilter by applying a nestedFeatureFilterto the parent feature.static final classAccept features that reside on a sequence with a particular name.static final classConstruct one of these to filter features by source.static final classConstruct one of these to filter features by type.static final classA filter that returns all features contained within a location.static final classAccept features with a given reading frame.static final classRetrieve features that contain a given annotation with any value.static classAccepts features where all immediate children meet the supplied filter.static classAccepts features where all descendants meet the supplied filter.static final classA filter that returns all features overlapping a location.static final classA filter that accepts all features whose shadow is contained by a specifiedLocation.static final classA filter that accepts all features whose shadow overlaps a specifiedLocation.static final classAccept features with a given strandedness.