Uses of Interface
org.biojava.bio.seq.RealizingFeatureHolder
Packages that use RealizingFeatureHolder
Package
Description
Parser for Phred output
Classes and interfaces for defining biological sequences and informatics
objects.
Standard in-memory implementations of
Sequence and
Feature.-
Uses of RealizingFeatureHolder in org.biojava.bio.program.phred
Classes in org.biojava.bio.program.phred that implement RealizingFeatureHolderModifier and TypeClassDescriptionclassPhredSequence is an extension of SimpleSequence that implements Qualitative to hold Phred quality scores. -
Uses of RealizingFeatureHolder in org.biojava.bio.seq
Classes in org.biojava.bio.seq that implement RealizingFeatureHolderModifier and TypeClassDescriptionclassA circular view onto another Sequence object.classA Sequence which is assembled from other sequences contained in a set of ComponentFeature objects.classA Sequence which is assembled from other sequences contained in a set of ComponentFeature objects. -
Uses of RealizingFeatureHolder in org.biojava.bio.seq.impl
Classes in org.biojava.bio.seq.impl that implement RealizingFeatureHolderModifier and TypeClassDescriptionclassA reverse complement view ontoSequenceinterface.classA no-frills implementation of a feature.classTitle: SimpleFramedFeature.classclassA no-frills implementation of a remote feature.classSimpleRestrictionSiterepresents the recognition site of a restriction enzyme.classA basic implementation of theSequenceinterface.classSimpleSimilarityPairFeaturerepresents a similarity between a query sequence and a subject sequence as produced by a search program.classA no-frills implementation of StrandedFeature.classA view onto another Sequence object.