Uses of Interface
org.biojava.bio.seq.StrandedFeature
Packages that use StrandedFeature
Package
Description
The classes and interfaces in this package cover common molecular
biological techniques such as restriction digests and PCR.
Classes and interfaces for defining biological sequences and informatics
objects.
The classes and interfaces for defining sequence similarity and
honology.
Standard in-memory implementations of
Sequence and
Feature.Rich implementations of Sequences, Locations and Features.
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Uses of StrandedFeature in org.biojava.bio.molbio
Subinterfaces of StrandedFeature in org.biojava.bio.molbioModifier and TypeInterfaceDescriptioninterfaceRestrictionSiterepresents the recognition site of a restriction enzyme. -
Uses of StrandedFeature in org.biojava.bio.seq
Subinterfaces of StrandedFeature in org.biojava.bio.seqModifier and TypeInterfaceDescriptioninterfaceFeature which represents a component in an assembly (contig).interfaceTitle: FramedFeature.interfaceA feature that indicates that there is some remote feature that can't be represented entirely on a single Sequence. -
Uses of StrandedFeature in org.biojava.bio.seq.homol
Subinterfaces of StrandedFeature in org.biojava.bio.seq.homolModifier and TypeInterfaceDescriptioninterfaceinterfaceSimilarityPairFeaturedescribes a pairwise similarity between two nucleotide sequences (as it extendsStrandedFeature). -
Uses of StrandedFeature in org.biojava.bio.seq.impl
Classes in org.biojava.bio.seq.impl that implement StrandedFeatureModifier and TypeClassDescriptionclassTitle: SimpleFramedFeature.classclassA no-frills implementation of a remote feature.classSimpleRestrictionSiterepresents the recognition site of a restriction enzyme.classSimpleSimilarityPairFeaturerepresents a similarity between a query sequence and a subject sequence as produced by a search program.classA no-frills implementation of StrandedFeature. -
Uses of StrandedFeature in org.biojavax.bio.seq
Subinterfaces of StrandedFeature in org.biojavax.bio.seqModifier and TypeInterfaceDescriptioninterfaceRepresents a feature that can be given name and rank and be moved from one sequence to another.Classes in org.biojavax.bio.seq that implement StrandedFeature