BioSQLSequenceDBProvider (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.bio.seq.db.biosql.BioSQLSequenceDBProvider

All Implemented Interfaces:: SequenceDBProvider

public class BioSQLSequenceDBProvider extends Object implements SequenceDBProvider

Deprecated.

Use hibernate and org.biojavax.bio.db.*

Author:: Thomas Down

Constructor Summary

Constructors

Constructor

Description

BioSQLSequenceDBProvider()

Deprecated.
Method Summary

Modifier and Type

Method

Description

String

getName()

Deprecated.

The name of this provider.

SequenceDBLite

getSequenceDB(Map config)

Deprecated.

Get a sequence database.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- BioSQLSequenceDBProvider
  
  public BioSQLSequenceDBProvider()
  
  Deprecated.
Method Details
- getName
  
  public String getName()
  
  Deprecated.
  
  Description copied from interface: SequenceDBProvider
  
  The name of this provider.
  
  Specified by:
  
  getName in interface SequenceDBProvider
  
  Returns:
  
  the provider's name.
- getSequenceDB
  
  public SequenceDBLite getSequenceDB(Map config) throws RegistryException, BioException
  
  Deprecated.
  
  Description copied from interface: SequenceDBProvider
  
  Get a sequence database.
  
  Specified by:
  
  getSequenceDB in interface SequenceDBProvider
  
  Parameters:
  
  config - a Map containing key-value pairs identifying the database to resolve.
  
  Returns:
  
  a SequenceDBLite that was resolved.
  
  Throws:
  
  RegistryException
  
  BioException