Uses of Interface org.biojava.bio.seq.db.IndexStore (biojava-legacy 1.9.7 API)

Packages that use IndexStore

Package

Description

org.biojava.bio.seq.db

Collections of biological sequence data.

Uses of IndexStore in org.biojava.bio.seq.db

Classes in org.biojava.bio.seq.db that implement IndexStore

Modifier and Type

Class

Description

class

BioIndex

The original object for indexing sequence files.

class

EmblCDROMIndexStore

EmblCDROMIndexStores implement a read-only IndexStore backed by EMBL CD-ROM format binary indices.

class

TabIndexStore

Implements IndexStore as a serialized file for the java data and a tab-delimited file of offsets.

Methods in org.biojava.bio.seq.db that return IndexStore

Modifier and Type

Method

Description

IndexStore

IndexedSequenceDB.getIndexStore()

Retrieve the IndexStore.

Constructors in org.biojava.bio.seq.db with parameters of type IndexStore

Modifier

Constructor

Description

IndexedSequenceDB(IDMaker idMaker, IndexStore indexStore)

Create an IndexedSequenceDB by specifying both the IDMaker and IndexStore used.

IndexedSequenceDB(IndexStore indexStore)

Create an IndexedSequenceDB by specifying IndexStore used.