Uses of Interface
org.biojava.bio.seq.db.SequenceDBInstallation
Packages that use SequenceDBInstallation
Package
Description
Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
Collections of biological sequence data.
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Uses of SequenceDBInstallation in org.biojava.bio.program.ssbind
Fields in org.biojava.bio.program.ssbind declared as SequenceDBInstallationMethods in org.biojava.bio.program.ssbind that return SequenceDBInstallationModifier and TypeMethodDescriptionViewSequenceFactory.getSubjectDBInstallation()getSubjectDBInstallationreturns the installation in which all the databases searched may be found.Methods in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallationModifier and TypeMethodDescriptionvoidBlastLikeSearchBuilder.setSubjectDBInstallation(SequenceDBInstallation subjectDBs) setSubjectDBInstallationsets the subject database holder to a specific installation.voidViewSequenceFactory.setSubjectDBInstallation(SequenceDBInstallation subjectDBs) setSubjectDBInstallationsets the subject database holder to a specific installation.Constructors in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallationModifierConstructorDescriptionBlastLikeSearchBuilder(List target, SequenceDB querySeqHolder, SequenceDBInstallation subjectDBs) Creates a newBlastLikeSearchBuilderwhich will instantiate results into theListtarget. -
Uses of SequenceDBInstallation in org.biojava.bio.seq.db
Classes in org.biojava.bio.seq.db that implement SequenceDBInstallationModifier and TypeClassDescriptionclassDummySequenceDBInstallationis an implementation which returns the sameDummySequenceDBinstance regardless of the identifier used to retrieve a database.classThis class is an implementation of interface SequenceDBInstallation that manages a set of SequenceDB objects.