Package org.biojava.bio.seq.db.emblcd

package org.biojava.bio.seq.db.emblcd

Readers for the EMBL CD-ROM format binary index files used by EMBOSS and Staden packages.

  • Classes
    Class
    Description
    AcnumHitReader
    AcnumHitReader reads the "acnum.hit" file of an EMBL CD-ROM format binary index.
    AcnumTrgReader
    AcnumTrgReader reads the "acnum.trg" file of an EMBL CD-ROM format binary index.
    DivisionLkpReader
    DivisionLkpReader reads the "division.lkp" file of an EMBL CD-ROM format binary index.
    EmblCDROMIndexReader
    EmblCDROMIndexReader is an abstract class whose concrete subclasses read EMBL CD-ROM format indices from an underlying InputStream.
    EmblCDROMRandomAccess
    EmblCDROMRandomAccess is an abstract class whose concrete subclasses can perform fast lookups in EMBL CD-ROM format index files.
    EntryNamIdxReader
    EntryNamIdxReader reads the "entrynam.idx" file of an EMBL CD-ROM format binary index.
    EntryNamRandomAccess
    EntryNamRandomAccess objects provide random access to records within the "entrynam.idx" file of an EMBL CD-ROM format binary index.