SimilarityPairFeature.Template (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.bio.seq.Feature.Template

org.biojava.bio.seq.StrandedFeature.Template

org.biojava.bio.seq.homol.SimilarityPairFeature.Template

All Implemented Interfaces:: Serializable, Cloneable

Enclosing interface:: SimilarityPairFeature

public static class SimilarityPairFeature.Template extends StrandedFeature.Template

Template for construction of SimilarityPairFeatures.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type

Field

Description

Alignment

alignment

alignment Alignment field.

double

score

score of the search which produced the alignment.

SimilarityPairFeature

sibling

sibling SimilarityPairFeature field.

Fields inherited from class org.biojava.bio.seq.StrandedFeature.Template
strand

Fields inherited from class org.biojava.bio.seq.Feature.Template
annotation, location, source, sourceTerm, type, typeTerm
Constructor Summary

Constructors

Constructor

Description

Template()
Method Summary

Methods inherited from class org.biojava.bio.seq.Feature.Template
clone, equals, hashCode, toString

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

Field Details
- sibling
  
  public SimilarityPairFeature sibling
  
  sibling SimilarityPairFeature field. May be null if the reciprocal SimilarityPairFeature has not yet been created.
- alignment
  
  public Alignment alignment
  
  alignment Alignment field.
- score
  
  public double score
  
  score of the search which produced the alignment.
Constructor Details
- Template
  
  public Template()