AGAVEPredictedProteinHandler (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXFeatureHandler

org.biojava.bio.seq.io.agave.AGAVEPredictedProteinHandler

All Implemented Interfaces:: StAXContentHandler

public class AGAVEPredictedProteinHandler extends StAXFeatureHandler

Handles the AGAVE <predicted_protein> element

Author:: Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type

Field

Description

static final StAXHandlerFactory

AGAVE_PREDICTED_PROTEIN_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler
annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures
Method Summary

Modifier and Type

Method

Description

void

startElementHandler(String nsURI, String localName, String qName, Attributes attrs)

Element-specific handler.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler
addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- AGAVE_PREDICTED_PROTEIN_HANDLER_FACTORY
  
  public static final StAXHandlerFactory AGAVE_PREDICTED_PROTEIN_HANDLER_FACTORY
Method Details
- startElementHandler
  
  public void startElementHandler(String nsURI, String localName, String qName, Attributes attrs) throws SAXException
  
  Description copied from class: StAXFeatureHandler
  
  Element-specific handler. Subclass this to do something useful!
  
  Overrides:
  
  startElementHandler in class StAXFeatureHandler
  
  Throws:
  
  SAXException