AGAVEViewPropHandler (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVEViewPropHandler

All Implemented Interfaces:: StAXContentHandler

public class AGAVEViewPropHandler extends StAXPropertyHandler

Moves view attributes into annotation properties.

start --> view_start

end --> view_end

Author:: Hanning Ni Doubletwist Inc, Keith James, Matthew Pocock

Field Summary

Fields

Modifier and Type

Field

Description

static final StAXHandlerFactory

AGAVE_VIEW_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
featureListener, staxenv
Method Summary

Modifier and Type

Method

Description

void

startElementHandler(String nsURI, String localName, String qName, Attributes attrs)

Element-specific handler.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
addHandler, endElement, endElementHandler, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- AGAVE_VIEW_PROP_HANDLER_FACTORY
  
  public static final StAXHandlerFactory AGAVE_VIEW_PROP_HANDLER_FACTORY
Method Details
- startElementHandler
  
  public void startElementHandler(String nsURI, String localName, String qName, Attributes attrs) throws SAXException
  
  Description copied from class: StAXPropertyHandler
  
  Element-specific handler. Subclass this to do something useful!
  
  Overrides:
  
  startElementHandler in class StAXPropertyHandler
  
  Throws:
  
  SAXException