AGAVEXrefsPropHandler (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVEXrefsPropHandler

All Implemented Interfaces:: AGAVEDbIdCallbackItf, AGAVEXrefCallbackItf, StAXContentHandler

public class AGAVEXrefsPropHandler extends StAXPropertyHandler implements AGAVEDbIdCallbackItf, AGAVEXrefCallbackItf

Deals with database crossreferences (xrefs)

Author:: Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type

Field

Description

static final StAXHandlerFactory

AGAVE_XREFS_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
featureListener, staxenv
Method Summary

Modifier and Type

Method

Description

void

addDbId(AGAVEDbId db_id)

void

addXref(AGAVEXref xref)

void

endElementHandler(String nsURI, String localName, String qName, StAXContentHandler handler)

Element specific exit handler Subclass to do anything useful.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
addHandler, endElement, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- AGAVE_XREFS_PROP_HANDLER_FACTORY
  
  public static final StAXHandlerFactory AGAVE_XREFS_PROP_HANDLER_FACTORY
Method Details
- addDbId
  
  public void addDbId(AGAVEDbId db_id)
  
  Specified by:
  
  addDbId in interface AGAVEDbIdCallbackItf
- addXref
  
  public void addXref(AGAVEXref xref)
  
  Specified by:
  
  addXref in interface AGAVEXrefCallbackItf
- endElementHandler
  
  public void endElementHandler(String nsURI, String localName, String qName, StAXContentHandler handler) throws SAXException
  
  Description copied from class: StAXPropertyHandler
  
  Element specific exit handler Subclass to do anything useful.
  
  Overrides:
  
  endElementHandler in class StAXPropertyHandler
  
  Throws:
  
  SAXException