Class SimpleAnnotFilter

Method Details

• getAccession

  public String getAccession(Annotation annot)

  Specified by:

  getAccession in interface AGAVEAnnotFilter

• getKeyword

  public String getKeyword(Annotation annot)

  Specified by:

  getKeyword in interface AGAVEAnnotFilter

• getElementId

  public String getElementId(Annotation annot)

  Specified by:

  getElementId in interface AGAVEAnnotFilter

• getOrganism

  public String getOrganism(Annotation annot)

  Specified by:

  getOrganism in interface AGAVEAnnotFilter

• getLabel

  public String getLabel(Annotation annot)

  Specified by:

  getLabel in interface AGAVEAnnotFilter

• getDescription

  public String getDescription(Annotation annot)

  Specified by:

  getDescription in interface AGAVEAnnotFilter

• getMatchAlign

  public String getMatchAlign(Annotation annot)

  Specified by:

  getMatchAlign in interface AGAVEAnnotFilter

• getMatchRegion

  public AGAVEMatchRegion getMatchRegion(Annotation annot)

  Specified by:

  getMatchRegion in interface AGAVEAnnotFilter

• getQueryRegion

  public AGAVEQueryRegion getQueryRegion(Annotation annot)

  Specified by:

  getQueryRegion in interface AGAVEAnnotFilter

• getClassifySystem

  public String getClassifySystem(Annotation annot)

  Specified by:

  getClassifySystem in interface AGAVEAnnotFilter

• getClassifyId

  public String getClassifyId(Annotation annot)

  Specified by:

  getClassifyId in interface AGAVEAnnotFilter

• getClassifyType

  public String getClassifyType(Annotation annot)

  Specified by:

  getClassifyType in interface AGAVEAnnotFilter

• getExonIds

  public String[] getExonIds(Annotation annot)

  Specified by:

  getExonIds in interface AGAVEAnnotFilter

• getChromNum

  public String getChromNum(Annotation annot)

  Specified by:

  getChromNum in interface AGAVEAnnotFilter

• getIdAlias

  public AGAVEIdAlias[] getIdAlias(Annotation annot)

  Specified by:

  getIdAlias in interface AGAVEAnnotFilter

• getNote

  public String getNote(Annotation annot)

  Specified by:

  getNote in interface AGAVEAnnotFilter

• getAltIds

  public AGAVEDbId[] getAltIds(Annotation annot)

  Specified by:

  getAltIds in interface AGAVEAnnotFilter

• getMapLocation

  public AGAVEMapLocation[] getMapLocation(Annotation annot)

  Specified by:

  getMapLocation in interface AGAVEAnnotFilter

• getRelatedAnnot

  public AGAVERelatedAnnot[] getRelatedAnnot(Annotation annot)

  Specified by:

  getRelatedAnnot in interface AGAVEAnnotFilter

• getElementIds

  public String[] getElementIds(Annotation annot)

  Specified by:

  getElementIds in interface AGAVEAnnotFilter

• getGroupOrder

  public String getGroupOrder(Annotation annot)

  Specified by:

  getGroupOrder in interface AGAVEAnnotFilter

• getMatchDesc

  public String getMatchDesc(Annotation annot)

  Specified by:

  getMatchDesc in interface AGAVEAnnotFilter

• getFeatureType

  public String getFeatureType(Annotation annot)

  Specified by:

  getFeatureType in interface AGAVEAnnotFilter

• getResultType

  public String getResultType(Annotation annot)

  Specified by:

  getResultType in interface AGAVEAnnotFilter

• getConfidence

  public String getConfidence(Annotation annot)

  Specified by:

  getConfidence in interface AGAVEAnnotFilter

• getAlignLength

  public String getAlignLength(Annotation annot)

  Specified by:

  getAlignLength in interface AGAVEAnnotFilter

• getAlignUnits

  public String getAlignUnits(Annotation annot)

  Specified by:

  getAlignUnits in interface AGAVEAnnotFilter

• getXrefs

  public AGAVEXrefs[] getXrefs(Annotation annot)

  Specified by:

  getXrefs in interface AGAVEAnnotFilter

• getVersion

  public String getVersion(Annotation annot)

  Specified by:

  getVersion in interface AGAVEAnnotFilter

• getSequenceId

  public String getSequenceId(Annotation annot)

  Specified by:

  getSequenceId in interface AGAVEAnnotFilter

• getTaxonId

  public String getTaxonId(Annotation annot)

  Specified by:

  getTaxonId in interface AGAVEAnnotFilter

• getCloneId

  public String getCloneId(Annotation annot)

  Specified by:

  getCloneId in interface AGAVEAnnotFilter

• getCloneLibrary

  public String getCloneLibrary(Annotation annot)

  Specified by:

  getCloneLibrary in interface AGAVEAnnotFilter

• getChromosome

  public String getChromosome(Annotation annot)

  Specified by:

  getChromosome in interface AGAVEAnnotFilter

• getMapPosition

  public String getMapPosition(Annotation annot)

  Specified by:

  getMapPosition in interface AGAVEAnnotFilter

• getEcNumber

  public String getEcNumber(Annotation annot)

  Specified by:

  getEcNumber in interface AGAVEAnnotFilter

• getCreateDate

  public String getCreateDate(Annotation annot)

  Specified by:

  getCreateDate in interface AGAVEAnnotFilter

• getUpdateDate

  public String getUpdateDate(Annotation annot)

  Specified by:

  getUpdateDate in interface AGAVEAnnotFilter

• getOS

  public String getOS(Annotation annot)

  Specified by:

  getOS in interface AGAVEAnnotFilter

• getMolType

  public String getMolType(Annotation annot)

  Specified by:

  getMolType in interface AGAVEAnnotFilter

• getDbId

  public AGAVEDbId getDbId(Annotation annot)

  Specified by:

  getDbId in interface AGAVEAnnotFilter

• getProperty

  public AGAVEProperty[] getProperty(Annotation annot, String type)

  ThomasD made this a bit safer...

  Specified by:

  getProperty in interface AGAVEAnnotFilter