Uses of Class
org.biojava.bio.seq.io.agave.StAXContentHandlerBase
Packages that use StAXContentHandlerBase
Package
Description
Classes for converting between AGAVE XML and BioJava objects.
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Uses of StAXContentHandlerBase in org.biojava.bio.seq.io.agave
Subclasses of StAXContentHandlerBase in org.biojava.bio.seq.io.agaveModifier and TypeClassDescriptionclassDeals with alternate sequence IDsclassclassclassHandles the AGAVE <bio_sequence> elementclassHandles the AGAVE <bio_sequence> elementclassHandles the AGAVE <cds> elementclassHandles the AGAVE <chromosome> elementclassclassclassclassHandles the AGAVE <contig> elementclassDeals with database crossreferencesclassDeals with database crossreferencesclassclassclassclassclassclassclassHandles the root AGAVE element modified for agave formatclassclassDeals with AGAVE keywordsclassclassclassDeals with match_alignclassDeals with match_descclassDeals with match_regionclassHandles the AGAVE <mrna> elementclassDeals with noteclassHandles the AGAVE <predicted_protein> elementclassclassclassclassclassclasssci_propertyclassseq_featureclassseq_locationclasssequence_mapclassDeals with sequence codeclasstranscriptclassunordered_fragmentsclassMoves view attributes into annotation properties.classhandle AGAVE xrefclassxref_propertyclassDeals with database crossreferences (xrefs)classStAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler.classStAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler.