Uses of Interface
org.biojava.bio.seq.io.agave.StAXHandlerFactory
Packages that use StAXHandlerFactory
Package
Description
Classes for converting between AGAVE XML and BioJava objects.
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Uses of StAXHandlerFactory in org.biojava.bio.seq.io.agave
Fields in org.biojava.bio.seq.io.agave declared as StAXHandlerFactoryModifier and TypeFieldDescriptionstatic final StAXHandlerFactoryAGAVEAltIdsPropHandler.AGAVE_ALT_IDS_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEAnnotationsHandler.AGAVE_ANNOTATIONS_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEAssemblyHandler.AGAVE_ASSEMBLY_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEBioSeqHandler.AGAVE_BIO_SEQ_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEBioSequenceHandler.AGAVE_BIO_SEQUENCE_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVECdsHandler.AGAVE_CDS_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEChromosomeHandler.AGAVE_CHROMOSOME_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEClassificationHandler.AGAVE_CLASSIFICATION_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVECompResultHandler.AGAVE_COMP_RESULT_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEComputationHandler.AGAVE_COMPUTATION_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEContigHandler.AGAVE_CONTIG_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEDbIdPropHandler.AGAVE_DBID_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEDescPropHandler.AGAVE_DESC_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEElementIdPropHandler.AGAVE_ELEMENT_ID_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEEvidenceHandler.AGAVE_EVIDENCE_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEExonsPropHandler.AGAVE_EXONS_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEFragmentOrderHandler.AGAVE_FRAGMENT_ORDER_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEFragmentOrientationHandler.AGAVE_FRAGMENT_ORIENTATION_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEGeneHandler.AGAVE_GENE_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEIdAliasPropHandler.AGAVE_ID_ALIAS_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEKeywordPropHandler.AGAVE_KEYWORD_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEMapLocationPropHandler.AGAVE_MAP_LOCATION_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEMapPositionPropHandler.AGAVE_MAP_POSITION_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEMatchAlignPropHandler.AGAVE_MATCH_ALIGN_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEMatchDescPropHandler.AGAVE_MATCH_DESC_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEMatchRegionPropHandler.AGAVE_MATCH_REGION_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEMrnaHandler.AGAVE_MRNA_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVENotePropHandler.AGAVE_NOTE_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEPredictedProteinHandler.AGAVE_PREDICTED_PROTEIN_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEQualifierPropHandler.AGAVE_QUALIFIER_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEQueryRegionPropHandler.AGAVE_QUERY_REGION_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVERelatedAnnotPropHandler.AGAVE_RELATED_ANNOT_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEResultGroupHandler.AGAVE_RESULT_GROUP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEResultPropertyPropHandler.AGAVE_RESULT_PROPERTY_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVESciPropertyPropHandler.AGAVE_SCI_PROPERTY_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVESeqFeatureHandler.AGAVE_SEQ_FEATURE_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVESeqLocationPropHandler.AGAVE_SEQ_LOCATION_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVESeqMapHandler.AGAVE_SEQ_MAP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVESeqPropHandler.AGAVE_SEQ_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVETranscriptHandler.AGAVE_TRANSCRIPT_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEUnorderedFragmentsHandler.AGAVE_UNORDERED_FRAGMENTS_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEViewPropHandler.AGAVE_VIEW_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEXrefPropHandler.AGAVE_XREF_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEXrefPropPropHandler.AGAVE_XREF_PROP_PROP_HANDLER_FACTORYstatic final StAXHandlerFactoryAGAVEXrefsPropHandler.AGAVE_XREFS_PROP_HANDLER_FACTORYMethods in org.biojava.bio.seq.io.agave with parameters of type StAXHandlerFactoryModifier and TypeMethodDescriptionprotected voidStAXFeatureHandler.addHandler(ElementRecognizer rec, StAXHandlerFactory handler) protected voidStAXPropertyHandler.addHandler(ElementRecognizer rec, StAXHandlerFactory handler)