Uses of Interface
org.biojava.bio.seq.projection.ProjectionContext
Packages that use ProjectionContext
Package
Description
Standard in-memory implementations of
Sequence and
Feature.Code for projecting Feature objects and systematically altering their
properties.
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Uses of ProjectionContext in org.biojava.bio.seq.impl
Classes in org.biojava.bio.seq.impl that implement ProjectionContextModifier and TypeClassDescriptionclassstatic classTargetContext that implements the mapping between the parent sequence and this sub-sequence. -
Uses of ProjectionContext in org.biojava.bio.seq.projection
Classes in org.biojava.bio.seq.projection that implement ProjectionContextModifier and TypeClassDescriptionclassA good base class to implement ProjectionContext from.classA ProjectionContext that translates and optionaly flips features.Methods in org.biojava.bio.seq.projection that return ProjectionContextModifier and TypeMethodDescriptionProjectedFeatureHolder.getContext()ProjectedFeature.getProjectionContext()Projection.getProjectionContext()Methods in org.biojava.bio.seq.projection with parameters of type ProjectionContextModifier and TypeMethodDescriptionProjectionEngine.projectFeature(Feature f, ProjectionContext ctx) Return a projection of Featurefinto the system defined by a given ProjectionContext.ProjectionEngine.revertTemplate(Feature.Template templ, ProjectionContext ctxt) Revert a template so that it can be used on the original feature-space.ProjectionEngine.TemplateProjector.revertTemplate(ProjectionContext ctxt, Feature.Template projTempl) Constructors in org.biojava.bio.seq.projection with parameters of type ProjectionContextModifierConstructorDescriptionProjectedFeature(Feature f, ProjectionContext ctx) ProjectedFeatureHolder(ProjectionContext context)