org.biojava.bio.symbol.SimpleSymbolPropertyTable

Class that implements the SymbolPropertyTable interface

Author:: Mike Jones (primary author), David Huen (minor, extended class to cover pK)

Field Summary

Fields inherited from interface org.biojava.bio.symbol.SymbolPropertyTable
AVG_MASS, HYDROPATHICITY, MONO_MASS, PK, PK_Cterm, PK_Nterm
Constructor Summary

Constructors

Constructor

Description

SimpleSymbolPropertyTable(Alphabet source, String name)
Method Summary

Modifier and Type

Method

Description

Alphabet

getAlphabet()

double

getDoubleValue(Symbol s)

String

getName()

void

setDoubleProperty(Symbol s, String value)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- SimpleSymbolPropertyTable
  
  public SimpleSymbolPropertyTable(Alphabet source, String name)
Method Details
- setDoubleProperty
  
  public void setDoubleProperty(Symbol s, String value) throws IllegalSymbolException
  
  Throws:
  
  IllegalSymbolException
- getName
  
  public String getName()
  
  Specified by:
  
  getName in interface SymbolPropertyTable
- getAlphabet
  
  public Alphabet getAlphabet()
  
  Specified by:
  
  getAlphabet in interface SymbolPropertyTable
- getDoubleValue
  
  public double getDoubleValue(Symbol s) throws IllegalSymbolException
  
  Specified by:
  
  getDoubleValue in interface SymbolPropertyTable
  
  Throws:
  
  IllegalSymbolException

Class SimpleSymbolPropertyTable

Field Summary