Uses of Class
org.biojava.bio.symbol.AbstractSymbolList
Packages that use AbstractSymbolList
Package
Description
Classes to generate and describe sequence alignments.
Standard in-memory implementations of
Sequence and
Feature.Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of AbstractSymbolList in org.biojava.bio.alignment
Subclasses of AbstractSymbolList in org.biojava.bio.alignmentModifier and TypeClassDescriptionclassclassclassThis class stores the result of an alignment procedure that creates a pairwise alignment of two sequences.classFlexibleAlignment is a class which implements UnequalLengthAlignment, ARAlignment and EditableAlignment It places no restriction on where any sequence can be in the alignment so there could be gaps in the alignment.classA simple implementation of an Alignment. -
Uses of AbstractSymbolList in org.biojava.bio.seq.impl
Subclasses of AbstractSymbolList in org.biojava.bio.seq.implModifier and TypeClassDescriptionclassSupport class for applications which need to patch together sections of sequence into a single SymbolList.classSupport class for applications which need to patch together sections of sequence into a single SymbolList.classSimple implementation of GappedSequence. -
Uses of AbstractSymbolList in org.biojava.bio.symbol
Subclasses of AbstractSymbolList in org.biojava.bio.symbolModifier and TypeClassDescriptionclassSymbolList implementation using constant-size chunks.classSymbol list which just consists of non-informative symbols.classA SymbolList that stores symbols as bit-patterns in an array of longs.classThis implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.classBasic implementation of SymbolList.