Uses of Interface
org.biojava.bio.symbol.BasisSymbol
Packages that use BasisSymbol
Package
Description
HMM and Dynamic Programming Algorithms.
Tools for working with profile Hidden Markov Models from the HMMer package.
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of BasisSymbol in org.biojava.bio.dp
Subinterfaces of BasisSymbol in org.biojava.bio.dpModifier and TypeInterfaceDescriptioninterfaceA Dot state.interfaceA state in a markov process that has an emission spectrum.interfaceA state that contains an entire sub-model.interfaceA state in a markov process.Classes in org.biojava.bio.dp that implement BasisSymbolModifier and TypeClassDescriptionfinal classStart/end state for HMMs.classA Dot state that you can make and use.classclass -
Uses of BasisSymbol in org.biojava.bio.program.hmmer
Classes in org.biojava.bio.program.hmmer that implement BasisSymbol -
Uses of BasisSymbol in org.biojava.bio.symbol
Subinterfaces of BasisSymbol in org.biojava.bio.symbolClasses in org.biojava.bio.symbol that implement BasisSymbolModifier and TypeClassDescriptionstatic classA range of double values.static classA single double value.classAn atomic symbol consisting only of itself.static classA single int value.classA basic implementation of AtomicSymbol.Methods in org.biojava.bio.symbol with parameters of type BasisSymbolModifier and TypeMethodDescriptionbooleanSoftMaskedAlphabet.isMasked(BasisSymbol s) Determines if aSymbolis masked.