Uses of Class
org.biojava.bio.symbol.IntegerAlphabet.IntegerSymbol
Packages that use IntegerAlphabet.IntegerSymbol
Package
Description
Parser for Phred output
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of IntegerAlphabet.IntegerSymbol in org.biojava.bio.program.phred
Methods in org.biojava.bio.program.phred that return IntegerAlphabet.IntegerSymbolModifier and TypeMethodDescriptionstatic final IntegerAlphabet.IntegerSymbolPhredTools.integerSymbolFromPhred(Symbol phredSym) Retrives the IntegerSymbol component of the Phred BasisSymbol from the PHRED alphabet.Methods in org.biojava.bio.program.phred with parameters of type IntegerAlphabet.IntegerSymbolModifier and TypeMethodDescriptionstatic doublePhredTools.pFromQuality(IntegerAlphabet.IntegerSymbol quality) Calculates the probability of an error from the quality score via the formula P_e = 10**(QV/-10) -
Uses of IntegerAlphabet.IntegerSymbol in org.biojava.bio.symbol
Methods in org.biojava.bio.symbol that return IntegerAlphabet.IntegerSymbol