Uses of Interface
org.biojava.bio.symbol.Location

This cardinality contains no intengers, not even zero.

The property should have one or more values.

The property should have zero or one values.

Get the cardinality constraint used to validate the number of property values.

Set the constraints associated with a property.

Set the constraints that will apply to all properties without an explicitly defined set of constraints.

Create a Contains based upon a PropertyConstraint and a cardinality.

The location of an individual SymbolList relative to overall Alignment

loc in this case is the Alignment Location

loc in this case is the SymbolList Location

Return a location which identifies a portion of the component sequence which is to be included in the assembly.

Retrieve the Location of the Region.

Construct a filter which matches features with locations contained by or overlapping the specified Location.

Construct a filter which matches features with locations where the interval between the min and max positions are contained by the specified Location.

Creates a filter that returns everything overlapping loc.

Creates a filter that returns everything contained within loc.

formatLocation creates a String representation of a Location.

Allows nesting class that manages a gene template to gain information about its extent from nested elements.

Abstract Location decorator (wrapper).

Between view onto an underlying Location instance.

A 'fuzzy' location a-la Embl fuzzy locations.

Produced by LocationTools as a result of union operations.

A simple implementation of Location that contains all points between getMin and getMax inclusive.

The Location which contains all points.

Flips a location relative to a length.

Checks the decorator chain for an instance of decoratorClass and return it if found.

Returns a Location that contains all points common to both ranges.

Translate a Location onto the gapped view, splitting blocks if necessary

Create a new instance of Location with all of the same decorators as this instance but with the data stored in loc.

Subtract one location from another.

Create a location that is a translation of this location.

Return a Location containing all points in either ranges.

Return the union of two locations.

Return the number of contiguous blocks in a location.

Checks if this location contains the other.

Return the number of positions which are covered by a Location

Translates a Location from the gapped view into the underlying sequence.

Return the intersection of two locations.

Checks if these two locations overlap, using this location's concept of overlapping.

Return a contiguous location running from the minimum to the maximum points of the specified location.

Subtract one location from another.

Return a Location containing all points in either ranges.

Makes a CircularLocation where the 5' end of the Location is specified.

An Empty implementation of RichLocation.

A simple implementation of RichLocation.

Checks the decorator chain for an instance of decoratorClass and return it if found.

The location of this feature.

Returns a Location that contains all points common to both ranges.

Create a new instance of Location with all of the same decorators as this instance but with the data stored in loc.

Create a new instance of Location with all of the same decorators as this instance but with the data stored in loc.

Create a location that is a translation of this location.

Create a location that is a translation of this location.

Return a Location containing all points in either ranges.

Takes a location and returns the set of all members.

Checks if this location contains the other.

Attempts to convert a plain Location into a RichLocation.

Returns a Location that contains all points common to both ranges.

Takes two circular locations of given length, and shifts them left along the sequence until they sit at the earliest possible point where they still would represent the same sequence.

Create a new instance of Location with all of the same decorators as this instance but with the data stored in loc.

Checks if these two locations overlap, using this location's concept of overlapping.

Checks if these two locations overlap, using this location's concept of overlapping.

Return a Location containing all points in either ranges.

Return a Location containing all points in either ranges.

Takes a set of locations and returns the set of all members.

Takes a set of locations and tries to merge all pairs where the union operation results in a simple rich location, not a compound one.