Uses of Class
org.biojava.bio.symbol.RangeLocation
Packages that use RangeLocation
Package
Description
Graphical displays of biological sequences and associated annotations.
Classes for the handling of the layout of a WrappedSequencePanel.
Classes and interfaces for defining biological sequences and informatics
objects.
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of RangeLocation in org.biojava.bio.gui.sequence
Methods in org.biojava.bio.gui.sequence that return RangeLocationModifier and TypeMethodDescriptionHeadlessRenderContext.getRange()PairwiseSequencePanel.getRange()getRangereturns aRangeLocationrepresenting the region of the sequence currently being rendered.SequencePanel.getRange()SequencePanelWrapper.getRange()SequencePoster.getRange()Deprecated.SequenceRenderContext.getRange()The range of the SymbolList to render.SubPairwiseRenderContext.getRange()SubSequenceRenderContext.getRange()TranslatedSequencePanel.getRange()getRangereturns aRangeLocationrepresenting the region of the sequence currently being rendered.PairwiseRenderContext.getSecondaryRange()getSecondaryRangereturns the range of the secondary sequence currently rendered.PairwiseSequencePanel.getSecondaryRange()getSecondaryRangereturns aRangeLocationrepresenting the region of the secondary sequence currently being rendered.SubPairwiseRenderContext.getSecondaryRange()SequencePoster.getVisibleRange()Deprecated.Methods in org.biojava.bio.gui.sequence with parameters of type RangeLocationModifier and TypeMethodDescriptionprotected SequenceRenderContextGappedRenderer.makeContext(SequenceRenderContext src, RangeLocation loc) voidSequencePanel.setRange(RangeLocation range) voidSequencePanelWrapper.setRange(RangeLocation loc) Constructors in org.biojava.bio.gui.sequence with parameters of type RangeLocationModifierConstructorDescriptionHeadlessRenderContext(Sequence seq, RangeLocation range, int width) SubPairwiseRenderContext(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange) Creates a newSubPairwiseRenderContext.SubSequenceRenderContext(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range) SubSequenceRenderContext(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range, int symOffset) -
Uses of RangeLocation in org.biojava.bio.gui.sequence.tracklayout
Methods in org.biojava.bio.gui.sequence.tracklayout that return RangeLocationModifier and TypeMethodDescriptionSimpleTrackLayout.getRanges()TrackLayout.getRanges()UserDefinedTrackLayout.getRanges()Methods in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocationModifier and TypeMethodDescriptionvoidSimpleTrackLayout.setRange(RangeLocation loc) voidTrackLayout.setRange(RangeLocation loc) voidUserDefinedTrackLayout.setRange(RangeLocation loc) Constructors in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocation -
Uses of RangeLocation in org.biojava.bio.seq
Methods in org.biojava.bio.seq with parameters of type RangeLocationModifier and TypeMethodDescriptionstatic SequenceSequenceTools.maskSequence(Sequence seq, RangeLocation loc) Mask of a sequence. -
Uses of RangeLocation in org.biojava.bio.seq.io.game
Methods in org.biojava.bio.seq.io.game with parameters of type RangeLocationModifier and TypeMethodDescriptionvoidGAMEFeatureSetHandler.reportExon(RangeLocation range, StrandedFeature.Strand strand) voidGAMETranscriptCallbackItf.reportExon(RangeLocation range, StrandedFeature.Strand strand) Allows nesting class that manages a transcript template to gain information about its extent from nested elements that represent exons. -
Uses of RangeLocation in org.biojava.bio.symbol
Subclasses of RangeLocation in org.biojava.bio.symbolModifier and TypeClassDescriptionclassProduced by LocationTools as a result of union operations.