Uses of Interface
org.biojava.bio.symbol.SoftMaskedAlphabet.MaskingDetector
Packages that use SoftMaskedAlphabet.MaskingDetector
Package
Description
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of SoftMaskedAlphabet.MaskingDetector in org.biojava.bio.symbol
Classes in org.biojava.bio.symbol that implement SoftMaskedAlphabet.MaskingDetectorModifier and TypeClassDescriptionstatic classFields in org.biojava.bio.symbol declared as SoftMaskedAlphabet.MaskingDetectorModifier and TypeFieldDescriptionstatic final SoftMaskedAlphabet.MaskingDetectorSoftMaskedAlphabet.MaskingDetector.DEFAULTMethods in org.biojava.bio.symbol that return SoftMaskedAlphabet.MaskingDetectorModifier and TypeMethodDescriptionSoftMaskedAlphabet.getMaskingDetector()Getter for theMaskingDetectorMethods in org.biojava.bio.symbol with parameters of type SoftMaskedAlphabet.MaskingDetectorModifier and TypeMethodDescriptionstatic SoftMaskedAlphabetSoftMaskedAlphabet.getInstance(FiniteAlphabet alphaToMask, SoftMaskedAlphabet.MaskingDetector maskingDetector) Creates a compound alphabet that is a hybrid of the alphabet that is to be soft masked and a binary alphabet that indicates if anySymbolis soft masked or not.