Uses of Class
org.biojava.bio.symbol.SoftMaskedAlphabet
Packages that use SoftMaskedAlphabet
Package
Description
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of SoftMaskedAlphabet in org.biojava.bio.symbol
Methods in org.biojava.bio.symbol that return SoftMaskedAlphabetModifier and TypeMethodDescriptionstatic SoftMaskedAlphabetSoftMaskedAlphabet.getInstance(FiniteAlphabet alphaToMask) Generates a soft masked Alphabet where lowercase tokens are assumed to be soft masked.static SoftMaskedAlphabetSoftMaskedAlphabet.getInstance(FiniteAlphabet alphaToMask, SoftMaskedAlphabet.MaskingDetector maskingDetector) Creates a compound alphabet that is a hybrid of the alphabet that is to be soft masked and a binary alphabet that indicates if anySymbolis soft masked or not.