Uses of Class
org.biojava.bio.symbol.UkkonenSuffixTree.SuffixNode
Packages that use UkkonenSuffixTree.SuffixNode
Package
Description
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of UkkonenSuffixTree.SuffixNode in org.biojava.bio.symbol
Methods in org.biojava.bio.symbol that return UkkonenSuffixTree.SuffixNodeModifier and TypeMethodDescriptionUkkonenSuffixTree.getRoot()UkkonenSuffixTree.jumpTo(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to) Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.UkkonenSuffixTree.walkTo(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to) This method is used to walk down the tree, from a given node.Methods in org.biojava.bio.symbol with parameters of type UkkonenSuffixTree.SuffixNodeModifier and TypeMethodDescriptionprotected ArrayListUkkonenSuffixTree.getAllNodes(UkkonenSuffixTree.SuffixNode root, ArrayList list, boolean leavesOnly) protected CharSequenceUkkonenSuffixTree.getEdgeLabel(UkkonenSuffixTree.SuffixNode child) protected intUkkonenSuffixTree.getEdgeLength(UkkonenSuffixTree.SuffixNode child) Tree navigation methodsprotected CharSequenceUkkonenSuffixTree.getLabel(UkkonenSuffixTree.SuffixNode node) protected intUkkonenSuffixTree.getPathEnd(UkkonenSuffixTree.SuffixNode node) protected intUkkonenSuffixTree.getPathLength(UkkonenSuffixTree.SuffixNode node) UkkonenSuffixTree.jumpTo(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to) Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.UkkonenSuffixTree.walkTo(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to) This method is used to walk down the tree, from a given node.