Uses of Interface
org.biojava.bio.taxa.TaxonFactory
Packages that use TaxonFactory
Package
Description
General purpose Sequence storage in a relational database.
Classes and interfaces for processing and producing flat-file representations
of sequences.
Taxonomy object for representing species information.
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Uses of TaxonFactory in org.biojava.bio.seq.db.biosql
Methods in org.biojava.bio.seq.db.biosql with parameters of type TaxonFactoryModifier and TypeMethodDescriptionstatic voidTaxonSQL.automaticUpdate(Connection conn, DBHelper helper, TaxonFactory factory, File delnodes, File merged) Deprecated.This method tries to perform a complete update according to the givenTaxonFactory, which already contains the newes taxa and the files available at the NCBI-FTP-Site. -
Uses of TaxonFactory in org.biojava.bio.seq.io
Constructors in org.biojava.bio.seq.io with parameters of type TaxonFactoryModifierConstructorDescriptionFactory(SequenceBuilderFactory delegateFactory, TaxonFactory taxonFactory, TaxonParser taxonParser, String sciNameKey, String commonNameKey, String ncbiTaxonKey) OrganismParser(SequenceBuilder delegate, TaxonFactory taxonFactory, TaxonParser taxonParser, String sciNameKey, String commonNameKey, String ncbiTaxonKey) Deprecated. -
Uses of TaxonFactory in org.biojava.bio.taxa
Classes in org.biojava.bio.taxa that implement TaxonFactoryModifier and TypeClassDescriptionclassDeprecated.classDeprecated.replaced by classes inorg.biojavax.bio.taxaMethods in org.biojava.bio.taxa with parameters of type TaxonFactoryModifier and TypeMethodDescriptionEbiFormat.parse(TaxonFactory taxonFactory, String taxonString) Deprecated.TaxonParser.parse(TaxonFactory taxonFactory, String taxonString) Deprecated.Convert a stringified Taxon into a Taxon instance.
org.biojavax.bio.taxa