Registry (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.directory.Registry

public class Registry extends Object

Registry is a factory which gets implementations of the BioJava SequenceDBLite interface. This is the point of entry for OBDA access.

Version:: $Revision$
Author:: Brian Gilman, Thomas Down, Keith James

Constructor Summary

Constructors

Constructor

Description

Registry(RegistryConfiguration regConfig)

Creates a new OBDA Registry with the specified configuration.
Method Summary

Modifier and Type

Method

Description

SequenceDBLite

getDatabase(String dbName)

getDatabase retrieves a database instance known by a name String.

RegistryConfiguration

getRegistryConfiguration()

getRegistryConfiguration returns the configuration of the registry.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- Registry
  
  public Registry(RegistryConfiguration regConfig)
  
  Creates a new OBDA Registry with the specified configuration.
  
  Parameters:
  
  regConfig - a RegistryConfiguration.
Method Details
- getDatabase
  
  public SequenceDBLite getDatabase(String dbName) throws RegistryException, BioException
  
  getDatabase retrieves a database instance known by a name String.
  
  Parameters:
  
  dbName - a String database name.
  
  Returns:
  
  a SequenceDBLite.
  
  Throws:
  
  RegistryException - if the registry does not contain a configuration for the specified name.
  
  BioException - if the provider fails.
- getRegistryConfiguration
  
  public RegistryConfiguration getRegistryConfiguration()
  
  getRegistryConfiguration returns the configuration of the registry.
  
  Returns:
  
  a RegistryConfiguration.