Uses of Class
org.biojava.directory.RegistryException
Packages that use RegistryException
Package
Description
Client for the OBDA BioFetch protocol.
General purpose Sequence storage in a relational database.
Support for OBDA flatfile databases.
Open Bio Sequence Database Access (OBDA) registry support.
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Uses of RegistryException in org.biojava.bio.seq.db.biofetch
Methods in org.biojava.bio.seq.db.biofetch that throw RegistryException -
Uses of RegistryException in org.biojava.bio.seq.db.biosql
Methods in org.biojava.bio.seq.db.biosql that throw RegistryException -
Uses of RegistryException in org.biojava.bio.seq.db.flat
Methods in org.biojava.bio.seq.db.flat that throw RegistryException -
Uses of RegistryException in org.biojava.directory
Subclasses of RegistryException in org.biojava.directoryModifier and TypeClassDescriptionclassProviderNotFoundExceptionis thrown when a sequence database provider can not be located.Methods in org.biojava.directory that throw RegistryExceptionModifier and TypeMethodDescriptionvoidRegistryConfiguration.Composite.addBottomConfig(RegistryConfiguration newConfig) Add a configuration as the most default place to look.voidRegistryConfiguration.Composite.addTopConfig(RegistryConfiguration newConfig) Add a configuration as the most authoritative place to look.RegistryConfiguration.getConfiguration()getConfigurationreturns a mapping of registry database names to collections of tag-value pairs.Registry.getDatabase(String dbName) getDatabaseretrieves a database instance known by a nameString.SequenceDBProvider.getSequenceDB(Map config) Get a sequence database.static RegistryConfigurationOBDARegistryParser.parseRegistry(BufferedReader in, String locator) parseRegistryparses an Open Bioinformatics Database Access (OBDA) configuration file.