org.biojava.ontology.Term.Impl

All Implemented Interfaces:: Serializable, Annotatable, Term, Changeable

Direct Known Subclasses:: Variable.Impl

Enclosing interface:: Term

public static class Term.Impl extends AbstractTerm implements Term, Serializable

Simple in-memory implementation of an ontology term.

See Also:

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
Annotatable.AnnotationForwarder

Nested classes/interfaces inherited from interface org.biojava.ontology.Term
Term.Impl
Field Summary

Fields inherited from class org.biojava.ontology.AbstractTerm
description

Fields inherited from interface org.biojava.bio.Annotatable
ANNOTATION

Fields inherited from interface org.biojava.ontology.Term
ONTOLOGY
Constructor Summary

Constructors

Constructor

Description

Impl(Ontology ontology, String name)

Impl(Ontology ontology, String name, String description)

Impl(Ontology ontology, String name, String description, Object[] synonyms)
Method Summary

Modifier and Type

Method

Description

void

addSynonym(Object synonym)

Add a synonym for this term.

boolean

equals(Object obj)

Annotation

getAnnotation()

Should return the associated annotation object.

String

getDescription()

Return a human-readable description of this term, or the empty string if none is available.

String

getName()

Return the name of this term.

Ontology

getOntology()

Return the ontology in which this term exists.

Object[]

getSynonyms()

Return the synonyms for this term.

int

hashCode()

void

removeSynonym(Object synonym)

Remove a synonym for this term.

void

setAnnotation(Annotation annotation)

void

setSynonyms(Set<Object> synonyms)

String

toString()

Methods inherited from class org.biojava.ontology.AbstractTerm
getChangeSupport, setDescription

Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from interface org.biojava.ontology.Term
setDescription

Constructor Details
- Impl
  
  public Impl(Ontology ontology, String name)
- Impl
  
  public Impl(Ontology ontology, String name, String description)
- Impl
  
  public Impl(Ontology ontology, String name, String description, Object[] synonyms)
Method Details
- addSynonym
  
  public void addSynonym(Object synonym)
  
  Description copied from interface: Term
  
  Add a synonym for this term.
  
  Specified by:
  
  addSynonym in interface Term
  
  Parameters:
  
  synonym - the synonym
- removeSynonym
  
  public void removeSynonym(Object synonym)
  
  Description copied from interface: Term
  
  Remove a synonym for this term.
  
  Specified by:
  
  removeSynonym in interface Term
- getSynonyms
  
  public Object[] getSynonyms()
  
  Description copied from interface: Term
  
  Return the synonyms for this term.
  
  Specified by:
  
  getSynonyms in interface Term
  
  Returns:
  
  the synonyms
- getName
  
  public String getName()
  
  Description copied from interface: Term
  
  Return the name of this term.
  
  Specified by:
  
  getName in interface Term
  
  Returns:
  
  the name of the term
- setAnnotation
  
  public void setAnnotation(Annotation annotation)
- setSynonyms
  
  public void setSynonyms(Set<Object> synonyms)
- getDescription
  
  public String getDescription()
  
  Description copied from interface: Term
  
  Return a human-readable description of this term, or the empty string if none is available.
  
  Specified by:
  
  getDescription in interface Term
  
  Returns:
  
  the description of the term
- getOntology
  
  public Ontology getOntology()
  
  Description copied from interface: Term
  
  Return the ontology in which this term exists.
  
  Specified by:
  
  getOntology in interface Term
  
  Returns:
  
  the ontology
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object
- getAnnotation
  
  public Annotation getAnnotation()
  
  Description copied from interface: Annotatable
  
  Should return the associated annotation object.
  
  Specified by:
  
  getAnnotation in interface Annotatable
  
  Returns:
  
  an Annotation object, never null
- hashCode
  
  public int hashCode()
  
  Overrides:
  
  hashCode in class Object
- equals
  
  public boolean equals(Object obj)
  
  Overrides:
  
  equals in class Object

Class Term.Impl

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable

Nested classes/interfaces inherited from interface org.biojava.ontology.Term

Field Summary

Fields inherited from class org.biojava.ontology.AbstractTerm

Fields inherited from interface org.biojava.bio.Annotatable

Fields inherited from interface org.biojava.ontology.Term

Constructor Summary

Method Summary

Methods inherited from class org.biojava.ontology.AbstractTerm

Methods inherited from class org.biojava.utils.AbstractChangeable

Methods inherited from class java.lang.Object

Methods inherited from interface org.biojava.utils.Changeable

Methods inherited from interface org.biojava.ontology.Term

Constructor Details

Impl

Impl

Impl

Method Details

addSynonym

removeSynonym

getSynonyms

getName

setAnnotation

setSynonyms

getDescription

getOntology

toString

getAnnotation

hashCode

equals