Uses of Interface
org.biojava.stats.svm.SVMKernel
Packages that use SVMKernel
Package
Description
Support Vector Machine classification and regression.
Tools for use of the SVM package.
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Uses of SVMKernel in org.biojava.stats.svm
Classes in org.biojava.stats.svm that implement SVMKernelModifier and TypeClassDescriptionclassCaches the results of a nested kernel so that k(a, b) need only be calculated once.classAdds a class specific constant to k(x, x).classCaches the leading diagonal of a kernel matrix.classDeprecated.Just use SparseVector.kernel instead...classThis kernel computes the sum of the dot products between items of two lists at corresponding indexes.classEncapsulates a kernel that wraps another kernel up.classPerforms a normalization on the results of a nested kernel.classThis kernel computes all possible products of order features in feature space.classThis kernel computes the radial base kernel that corresponds to a gausian distribution.classThis kernel implements a three layer neural net.static classA version of the standard dot-product kernel that scales each column independently.Fields in org.biojava.stats.svm declared as SVMKernelMethods in org.biojava.stats.svm that return SVMKernelModifier and TypeMethodDescriptionSimpleSVMClassifierModel.getKernel()SVMClassifierModel.getKernel()SVMRegressionModel.getKernel()NestedKernel.getNestedKernel()Retrieve the currently nested SVMKernel.SigmoidKernel.getWrappedKernel()Methods in org.biojava.stats.svm with parameters of type SVMKernelModifier and TypeMethodDescriptionvoidvoidCachingKernel.setNestedKernel(SVMKernel k) voidDiagonalCachingKernel.setNestedKernel(SVMKernel k) Set the kernel to nest.voidNestedKernel.setNestedKernel(SVMKernel k) Set the SVMKernel to nest to k.voidSigmoidKernel.setWrappedKernel(SVMKernel kernel) SMOTrainer.trainModel(SVMTarget target, SVMKernel kernel, TrainingListener l) Constructors in org.biojava.stats.svm with parameters of type SVMKernelModifierConstructorDescriptionCreates a new DiagonalCachingKernel that nests k.Create a new NestedKernel that wraps k.PolynomialKernel(SVMKernel nested, double order, double a, double c) RadialBaseKernel(SVMKernel nested, double width) SimpleSVMClassifierModel(SVMKernel kernel) SimpleSVMClassifierModel(SVMKernel kernel, Collection items) SimpleSVMClassifierModel(SVMKernel kernel, SVMTarget target) -
Uses of SVMKernel in org.biojava.stats.svm.tools
Classes in org.biojava.stats.svm.tools that implement SVMKernelModifier and TypeClassDescriptionclassComputes the dot-product of two suffix-trees as the sum of the products of the counts of all nodes they have in common.Fields in org.biojava.stats.svm.tools declared as SVMKernelModifier and TypeFieldDescriptionstatic SVMKernelClassifierExample.PointClassifier.polyKernelstatic SVMKernelClassifierExample.PointClassifier.rbfKernelMethods in org.biojava.stats.svm.tools that return SVMKernelModifier and TypeMethodDescriptionClassifierExample.PointClassifier.getKernel()Retrieve the currently used kernelMethods in org.biojava.stats.svm.tools with parameters of type SVMKernel