java.lang.Object

org.biojava.utils.automata.NfaSubModel

All Implemented Interfaces:: NfaBuilder

public class NfaSubModel extends Object implements NfaBuilder

This class caches a reference to all objects that it directs its delegate to make. These references make it relatively easy for it to duplicate all objects made through this class.

Method Summary

Modifier and Type

Method

Description

org.biojava.utils.automata.FiniteAutomaton.Transition

addEpsilonTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end)

org.biojava.utils.automata.FiniteAutomaton.Transition

addLambdaTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end)

org.biojava.utils.automata.FiniteAutomaton.Node

addNode(boolean isTerminal)

org.biojava.utils.automata.FiniteAutomaton.Transition

addTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end, Symbol sym)

void

append(NfaSubModel submodel)

org.biojava.utils.automata.FiniteAutomaton.NodeSet

createNodeSet()

NfaSubModel

duplicate()

Makes a deep clone of this instance.

FiniteAutomaton

getAutomaton()

org.biojava.utils.automata.FiniteAutomaton.Node

getEnd()

org.biojava.utils.automata.FiniteAutomaton.NodeSet

getNodes()

org.biojava.utils.automata.FiniteAutomaton.Node

getStart()

Set

getTransitions()

String

toString()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Details
- getAutomaton
  
  public FiniteAutomaton getAutomaton()
  
  Specified by:
  
  getAutomaton in interface NfaBuilder
- getStart
  
  public org.biojava.utils.automata.FiniteAutomaton.Node getStart()
  
  Specified by:
  
  getStart in interface NfaBuilder
- getEnd
  
  public org.biojava.utils.automata.FiniteAutomaton.Node getEnd()
  
  Specified by:
  
  getEnd in interface NfaBuilder
- addNode
  
  public org.biojava.utils.automata.FiniteAutomaton.Node addNode(boolean isTerminal)
  
  Specified by:
  
  addNode in interface NfaBuilder
- addTransition
  
  public org.biojava.utils.automata.FiniteAutomaton.Transition addTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end, Symbol sym)
  
  Specified by:
  
  addTransition in interface NfaBuilder
- addEpsilonTransition
  
  public org.biojava.utils.automata.FiniteAutomaton.Transition addEpsilonTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end)
  
  Specified by:
  
  addEpsilonTransition in interface NfaBuilder
- addLambdaTransition
  
  public org.biojava.utils.automata.FiniteAutomaton.Transition addLambdaTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end)
  
  Specified by:
  
  addLambdaTransition in interface NfaBuilder
- getNodes
  
  public org.biojava.utils.automata.FiniteAutomaton.NodeSet getNodes()
  
  Specified by:
  
  getNodes in interface NfaBuilder
- getTransitions
  
  public Set getTransitions()
  
  Specified by:
  
  getTransitions in interface NfaBuilder
- createNodeSet
  
  public org.biojava.utils.automata.FiniteAutomaton.NodeSet createNodeSet()
  
  Specified by:
  
  createNodeSet in interface NfaBuilder
- duplicate
  
  public NfaSubModel duplicate()
  
  Makes a deep clone of this instance.
- append
  
  public void append(NfaSubModel submodel)
- toString
  
  public String toString()
  
  Specified by:
  
  toString in interface NfaBuilder
  
  Overrides:
  
  toString in class Object

Class NfaSubModel

Method Summary

Methods inherited from class java.lang.Object

Method Details

getAutomaton

getStart

getEnd

addNode

addTransition

addEpsilonTransition

addLambdaTransition

getNodes

getTransitions

createNodeSet

duplicate

append

toString