Uses of Class
org.biojava.utils.ChangeType
Packages that use ChangeType
Package
Description
The core classes that will be used throughout the bio packages.
Classes to generate and describe sequence alignments.
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
Graphical displays of biological sequences and associated annotations.
Support classes for Homologene data.
Interfaces and classes for representing sequence similarity search results.
Classes and interfaces for defining biological sequences and informatics
objects.
Collections of biological sequence data.
Sequences and SequenceDBs which are composed from data taken
from a number of data sources.
The classes and interfaces for defining sequence similarity and
honology.
Standard in-memory implementations of
Sequence and
Feature.Code for projecting Feature objects and systematically altering their
properties.
Representation of the Symbols that make up a sequence, and locations within
them.
Taxonomy object for representing species information.
A general-purpose API for ontologies.
Miscellaneous utility classes used by other BioJava components.
A simple cache system with pluggable caching behaviours.
The Biojava extensions packages, classes that extend the core biojava
functionality
Classes to represent biological entities and their relationships.
Interactions between biojavax objects and a DB.
Rich implementations of Sequences, Locations and Features.
Objects that model the NCBI taxonomy schema as described in the BioSQL
schema.
Classes to provide a genetic algorithm framework
GA functions
Extensions to the biojava ontology model that represent BioSQL ontology.
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Uses of ChangeType in org.biojava.bio
Fields in org.biojava.bio declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeAnnotatable.ANNOTATIONSignals that the associated Annotation has altered in some way.static final ChangeTypeMergeAnnotation.ANNOTATION_ADDChangeType of ChangeEvent fired before and after an annotation is added to MergeAnnotation.static final ChangeTypeMergeAnnotation.ANNOTATION_CHANGEDChangeType of ChangeEvent fired before and after an annotation is added to MergeAnnotation.static final ChangeTypeMergeAnnotation.ANNOTATION_REMOVEChangeType of ChangeEvent fired before and after an annotation is added to MergeAnnotation.static final ChangeTypeAnnotation.PROPERTYThis type symbolizes that one or more properties have changed.Methods in org.biojava.bio with parameters of type ChangeTypeModifier and TypeMethodDescriptionprotected ChangeSupportMergeAnnotation.getChangeSupport(ChangeType changeType) protected ChangeSupportOverlayAnnotation.getChangeSupport(ChangeType changeType) -
Uses of ChangeType in org.biojava.bio.alignment
Fields in org.biojava.bio.alignment declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeARAlignment.ADD_LABELstatic final ChangeTypeAlignment.CONTENTSignals that SymbolLists will be added to or removed from an alignment.static final ChangeTypeEditableAlignment.GAPSstatic final ChangeTypeEditableAlignment.LOCATIONstatic final ChangeTypeARAlignment.REMOVE_LABEL -
Uses of ChangeType in org.biojava.bio.dist
Fields in org.biojava.bio.dist declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeCount.COUNTSWhenever a component count changes the values that would be returned by getCount, they should fire a ChangeEvent with this object as the type.static final ChangeTypeDistribution.NULL_MODELWhenever the null model distribution changes the values that would be returned by getWeight, either by being edited or by being replaced, a ChangeEvent with this object as the type should be thrown.static final ChangeTypeDistribution.WEIGHTSWhenever a distribution changes the values that would be returned by getWeight, they should fire a ChangeEvent with this object as the type.Methods in org.biojava.bio.dist with parameters of type ChangeTypeModifier and TypeMethodDescriptionprotected ChangeSupportAbstractDistribution.getChangeSupport(ChangeType ct) protected ChangeSupportAbstractOrderNDistribution.getChangeSupport(ChangeType ct) protected ChangeSupportTranslatedDistribution.getChangeSupport(ChangeType ct) -
Uses of ChangeType in org.biojava.bio.dp
Fields in org.biojava.bio.dp declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeEmissionState.ADVANCEThis signals that the advance array has been altered.static final ChangeTypeMarkovModel.ARCHITECTURESignals that the architecture of the model is changing.static final ChangeTypeEmissionState.DISTRIBUTIONThis signals that the distribution associate with an EmissionState has been altered.static final ChangeTypeMarkovModel.PARAMETERSignals that one or more parameters have altered.Methods in org.biojava.bio.dp with parameters of type ChangeTypeModifier and TypeMethodDescriptionprotected ChangeSupportSimpleEmissionState.getChangeSupport(ChangeType ct) protected ChangeSupportSimpleMarkovModel.getChangeSupport(ChangeType ct) -
Uses of ChangeType in org.biojava.bio.gui.sequence
Fields in org.biojava.bio.gui.sequence declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeAbiTraceRenderer.DEPTHstatic final ChangeTypeAbstractBeadRenderer.DEPTHConstantDEPTHindicating a change to the depth of the renderer.static final ChangeTypeTickFeatureRenderer.DEPTHstatic final ChangeTypeAbstractPeptideDigestRenderer.DIGESTstatic final ChangeTypePeptideDigestRenderer.DIGESTstatic final ChangeTypeAbstractBeadRenderer.DISPLACEMENTConstantDISPLACEMENTindicating a change to the Y-axis displacement of the features.static ChangeTypeFeatureBlockSequenceRenderer.FEATURE_COLLAPSINGstatic ChangeTypeFeatureBlockSequenceRenderer.FEATURE_RENDERERstatic final ChangeTypeAbstractBeadRenderer.FILLConstantFILLindicating a change to the fill of the features.static final ChangeTypeBasicFeatureRenderer.FILLstatic final ChangeTypeTickFeatureRenderer.FILLstatic ChangeTypeFilteringRenderer.FILTERstatic final ChangeTypePairwiseFilteringRenderer.FILTERConstantFILTERindicating a change to the renderer's filter.static final ChangeTypeRectangularBeadRenderer.HEIGHTSCALINGConstantHEIGHTSCALINGindicating a change to the feature height scaling policy.static ChangeTypeAlignmentRenderer.LABELstatic final ChangeTypeSimpleLabelRenderer.LABELstatic final ChangeTypeFeatureLabelRenderer.LABEL_MAKERstatic final ChangeTypeSequenceRenderContext.LAYOUTstatic final ChangeTypeOffsetRulerRenderer.OFFSETstatic final ChangeTypeAbstractBeadRenderer.OUTLINEConstantOUTLINEindicating a change to the outline paint of the features.static final ChangeTypeBasicFeatureRenderer.OUTLINEstatic final ChangeTypeCrosshairRenderer.OUTLINEConstantOUTLINEindicating a change to the crosshair paint.static final ChangeTypePairwiseDiagonalRenderer.OUTLINEConstantOUTLINEindicating a change to the fill of the features.static final ChangeTypeTickFeatureRenderer.OUTLINEstatic ChangeTypePaddingRenderer.PADDINGEvent type for when the size of the padding changes.static final ChangeTypeEllipticalBeadRenderer.RATIOConstantRATIOindicating a change to the minimum allowed ratio of long axis to short axis of the features.static ChangeTypeFilteringRenderer.RECURSEstatic final ChangeTypePairwiseFilteringRenderer.RECURSEConstantRECURSEindicating a change to the renderer's filter recursion flag.static final ChangeTypeLabelledSequenceRenderer.RENDERERstatic ChangeTypeOverlayRendererWrapper.RENDERERstatic final ChangeTypePairwiseFilteringRenderer.RENDERERConstantRENDERERindicating a change to the renderer.static final ChangeTypePairwiseSequencePanel.RENDERERConstantRENDERERis aChangeTypewhich indicates a change to the renderer, requiring a layout update.static final ChangeTypeSequencePanel.RENDERERstatic final ChangeTypeSequencePoster.RENDERERDeprecated.static ChangeTypeSequenceRendererWrapper.RENDERERstatic final ChangeTypeTranslatedSequencePanel.RENDERERConstantRENDERERis aChangeTypewhich indicates a change to the renderer, requiring a layout update.static final ChangeTypeMultiLineRenderer.RENDERERSstatic final ChangeTypePairwiseOverlayRenderer.RENDERERSConstantRENDERERSindicating a change to the renderers handled by the overlay.static final ChangeTypeStackedFeatureRenderer.RENDERERSstatic final ChangeTypeSequenceRenderContext.REPAINTstatic final ChangeTypeBasicFeatureRenderer.SCOOPstatic final ChangeTypeBasicFeatureRenderer.SIZEstatic final ChangeTypeAbstractBeadRenderer.STROKEConstantSTROKEindicating a change to the outline stroke of the features.static final ChangeTypeOffsetRulerRenderer.TICKSstatic final ChangeTypeAbiTraceRenderer.TRACEstatic final ChangeTypePairwiseSequencePanel.TRANSLATIONConstantTRANSLATIONis aChangeTypewhich indicates a change to the translation, requiring a paint update.static final ChangeTypeTranslatedSequencePanel.TRANSLATIONConstantTRANSLATIONis aChangeTypewhich indicates a change to the translation, requiring a paint update.static final ChangeTypeLabelledSequenceRenderer.VALUESMethods in org.biojava.bio.gui.sequence with parameters of type ChangeTypeModifier and TypeMethodDescriptionvoidPairwiseSequencePanel.addChangeListener(ChangeListener cl, ChangeType ct) addChangeListeneradds a listener for specific types of change.voidSequencePanel.addChangeListener(ChangeListener cl, ChangeType ct) voidSequencePoster.addChangeListener(ChangeListener cl, ChangeType ct) Deprecated.voidTranslatedSequencePanel.addChangeListener(ChangeListener cl, ChangeType ct) addChangeListeneradds a listener for specific types of change.protected ChangeSupportBumpedRenderer.getChangeSupport(ChangeType ct) protected ChangeSupportFeatureBlockSequenceRenderer.getChangeSupport(ChangeType ct) protected ChangeSupportFilteringRenderer.getChangeSupport(ChangeType ct) protected ChangeSupportMultiLineRenderer.getChangeSupport(ChangeType ct) protected ChangeSupportOverlayRendererWrapper.getChangeSupport(ChangeType ct) protected ChangeSupportPaddingRenderer.getChangeSupport(ChangeType ct) protected ChangeSupportPairwiseFilteringRenderer.getChangeSupport(ChangeType ct) protected ChangeSupportPairwiseOverlayRenderer.getChangeSupport(ChangeType ct) protected ChangeSupportPairwiseSequencePanel.getChangeSupport(ChangeType ct) getChangeSupportlazily instantiates a helper for change listeners.protected ChangeSupportSequencePanel.getChangeSupport(ChangeType ct) protected ChangeSupportSequencePoster.getChangeSupport(ChangeType ct) Deprecated.protected ChangeSupportSequenceRendererWrapper.getChangeSupport(ChangeType ct) protected ChangeSupportTranslatedSequencePanel.getChangeSupport(ChangeType ct) getChangeSupportlazily instantiates a helper for change listeners.booleanPairwiseSequencePanel.isUnchanging(ChangeType ct) booleanSequencePanel.isUnchanging(ChangeType ct) booleanSequencePoster.isUnchanging(ChangeType ct) Deprecated.booleanTranslatedSequencePanel.isUnchanging(ChangeType ct) voidPairwiseSequencePanel.removeChangeListener(ChangeListener cl, ChangeType ct) removeChangeListenerremoves a listener.voidSequencePanel.removeChangeListener(ChangeListener cl, ChangeType ct) voidSequencePoster.removeChangeListener(ChangeListener cl, ChangeType ct) Deprecated.voidTranslatedSequencePanel.removeChangeListener(ChangeListener cl, ChangeType ct) removeChangeListenerremoves a listener. -
Uses of ChangeType in org.biojava.bio.program.homologene
Fields in org.biojava.bio.program.homologene declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeOrthologueSet.MODIFYstatic final ChangeTypeOrthoPairSet.MODIFY -
Uses of ChangeType in org.biojava.bio.search
Methods in org.biojava.bio.search with parameters of type ChangeTypeModifier and TypeMethodDescriptionprotected ChangeSupportSequenceDBSearchHit.getChangeSupport(ChangeType ct) Deprecated.protected ChangeSupportSequenceDBSearchResult.getChangeSupport(ChangeType ct) Deprecated.protected ChangeSupportSequenceDBSearchSubHit.getChangeSupport(ChangeType ct) Deprecated.protected ChangeSupportSimpleSeqSimilaritySearchHit.getChangeSupport(ChangeType ct) protected ChangeSupportSimpleSeqSimilaritySearchResult.getChangeSupport(ChangeType ct) protected ChangeSupportSimpleSeqSimilaritySearchSubHit.getChangeSupport(ChangeType ct) -
Uses of ChangeType in org.biojava.bio.seq
Fields in org.biojava.bio.seq declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeFeatureHolder.FEATURESSignals that features have been added or removed directly within this FeatureHolder.static final ChangeTypeFeature.LOCATIONThe location of this feature is being altered.static final ChangeTypeFeatureHolder.SCHEMASignals that the schema of this FeatureHolder has changed.static final ChangeTypeFeature.SOURCEThe source of this feature has alteredstatic final ChangeTypeFeature.SOURCETERMThe ontological source of this feature has alteredstatic final ChangeTypeStrandedFeature.STRANDThe strand of this feature is being altered.static final ChangeTypeFeature.TYPEThe type of this feature has altered.static final ChangeTypeFeature.TYPETERMThe ontological type of this feature has altered.Methods in org.biojava.bio.seq with parameters of type ChangeTypeModifier and TypeMethodDescriptionprotected ChangeSupportFeatureTypes.RepositoryImpl.getChangeSupport(ChangeType ct) protected ChangeSupportLazyFeatureHolder.getChangeSupport(ChangeType ct) protected ChangeSupportNewSimpleAssembly.getChangeSupport(ChangeType ct) protected ChangeSupportSimpleAssembly.getChangeSupport(ChangeType ct) -
Uses of ChangeType in org.biojava.bio.seq.db
Fields in org.biojava.bio.seq.db declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeSequenceDBLite.SEQUENCESSignals that sequences are being added to or remove from the database.Methods in org.biojava.bio.seq.db with parameters of type ChangeTypeModifier and TypeMethodDescriptionprotected ChangeSupportSequenceDBWrapper.getChangeSupport(ChangeType ct) -
Uses of ChangeType in org.biojava.bio.seq.distributed
Fields in org.biojava.bio.seq.distributed declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeDistributedSequenceDB.DATASOURCEstatic final ChangeTypeDistributedSequenceDB.DATASOURCE_SELECTION -
Uses of ChangeType in org.biojava.bio.seq.homol
Fields in org.biojava.bio.seq.homol declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeHomology.ALIGNMENTSignals that the alignment describing the homologous sequences has changed.static final ChangeTypeSimilarityPairFeature.SIBLINGThe sibling of this feature has altered. -
Uses of ChangeType in org.biojava.bio.seq.impl
Methods in org.biojava.bio.seq.impl with parameters of type ChangeTypeModifier and TypeMethodDescriptionfinal voidLazyFilterFeatureHolder.addChangeListener(ChangeListener cl, ChangeType ct) voidSubSequence.addChangeListener(ChangeListener cl, ChangeType ct) protected ChangeSupportSimpleFeature.getChangeSupport(ChangeType ct) protected ChangeSupportSimpleSequence.getChangeSupport(ChangeType ct) booleanLazyFilterFeatureHolder.isUnchanging(ChangeType ct) booleanSubSequence.isUnchanging(ChangeType ct) final voidLazyFilterFeatureHolder.removeChangeListener(ChangeListener cl, ChangeType ct) voidSubSequence.removeChangeListener(ChangeListener cl, ChangeType ct) -
Uses of ChangeType in org.biojava.bio.seq.projection
Methods in org.biojava.bio.seq.projection with parameters of type ChangeTypeModifier and TypeMethodDescriptionvoidProjectedFeature.addChangeListener(ChangeListener cl, ChangeType ct) voidProjectionContext.addChangeListener(Feature projFeat, ChangeListener cl, ChangeType ct) Add a ChangeListener to a projected feature.final voidReparentContext.addChangeListener(Feature f, ChangeListener cl, ChangeType ct) booleanProjectedFeature.isUnchanging(ChangeType ct) voidProjectedFeature.removeChangeListener(ChangeListener cl, ChangeType ct) voidProjectionContext.removeChangeListener(Feature projFeat, ChangeListener cl, ChangeType ct) Remove a ChangeListener from a projected feature.final voidReparentContext.removeChangeListener(Feature f, ChangeListener cl, ChangeType ct) -
Uses of ChangeType in org.biojava.bio.symbol
Fields in org.biojava.bio.symbol declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeSymbolList.EDITSignals that the SymbolList is being edited.static final ChangeTypeAlphabetIndex.INDEXIndicates that the index is changing, probably due to the underlying alphabet changing.static final ChangeTypeAlphabet.PARSERSThis signals that the available parsers have changed.static final ChangeTypeAlphabet.SYMBOLSThis ChangeType indicates that some symbols have been added or removed from the alphabet.Methods in org.biojava.bio.symbol with parameters of type ChangeTypeModifier and TypeMethodDescriptionprotected ChangeSupportAbstractSymbol.getChangeSupport(ChangeType changeType) protected ChangeSupportSimpleAlphabet.getChangeSupport(ChangeType ct) -
Uses of ChangeType in org.biojava.bio.taxa
Fields in org.biojava.bio.taxa declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeTaxon.CHANGE_COMMON_NAMEDeprecated.Change type to indicate that the common name of this Taxon is changing.static final ChangeTypeTaxon.CHANGE_SCIENTIFIC_NAMEDeprecated.Change type to indicate that the scientific name of this Taxon is changing.Methods in org.biojava.bio.taxa with parameters of type ChangeTypeModifier and TypeMethodDescriptionprotected ChangeSupportAbstractTaxon.getChangeSupport(ChangeType ct) Deprecated. -
Uses of ChangeType in org.biojava.ontology
Fields in org.biojava.ontology declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeTerm.ONTOLOGYChangeType which indicates that this term's ontology has been alteredstatic final ChangeTypeOntology.TERMstatic final ChangeTypeOntology.TRIPLEMethods in org.biojava.ontology with parameters of type ChangeTypeModifier and TypeMethodDescriptionAbstractTerm.getChangeSupport(ChangeType ct) OntologyTerm.Impl.getChangeSupport(ChangeType ct) -
Uses of ChangeType in org.biojava.utils
Fields in org.biojava.utils declared as ChangeTypeModifier and TypeFieldDescriptionfinal ChangeTypeIndexedChangeHub.ListenerMemento.typestatic final ChangeTypeChangeType.UNKNOWNConstant ChangeType field which indicates that a change has occured which can't otherwise be represented.Methods in org.biojava.utils that return ChangeTypeModifier and TypeMethodDescriptionChangeEvent.getType()Find the type of this event.ChangeForwarder.Retyper.getType()Methods in org.biojava.utils with parameters of type ChangeTypeModifier and TypeMethodDescriptionfinal voidAbstractChangeable.addChangeListener(ChangeListener cl, ChangeType ct) voidChangeable.addChangeListener(ChangeListener cl, ChangeType ct) Add a listener that will be informed of changes of a given type.voidChangeSupport.addChangeListener(ChangeListener cl, ChangeType ct) Add a listener that will be informed of changes of a given type (and it's subtypes)final voidUnchangeable.addChangeListener(ChangeListener cl, ChangeType ct) final voidUnchangeable.addForwarder(ChangeForwarder cf, ChangeType ct) voidChangeHub.addListener(Object key, ChangeListener listener, ChangeType ct) add a ChangeListener associated with given key.voidIndexedChangeHub.addListener(Object key, ChangeListener listener, ChangeType ct) protected ChangeSupportAbstractChangeable.getChangeSupport(ChangeType ct) Called to retrieve the ChangeSupport for this object.final SetUnchangeable.getForwarders(ChangeType ct) final SetUnchangeable.getListeners(ChangeType ct) protected booleanAbstractChangeable.hasListeners(ChangeType ct) Discover if we have listeners registered for a particular change type.booleanChangeSupport.hasListeners(ChangeType ct) Return true if we have listeners registered for a particular change type.booleanChangeType.isMatchingType(ChangeType ct) Returntrueiffctis equal to this type or any of it's supertypes (including ChangeType.UNKNOWN).final booleanAbstractChangeable.isUnchanging(ChangeType ct) booleanChangeable.isUnchanging(ChangeType ct) A particular ChangeType can never be raised by this Changeable.booleanChangeSupport.isUnchanging(ChangeType ct) final booleanUnchangeable.isUnchanging(ChangeType ct) final voidAbstractChangeable.removeChangeListener(ChangeListener cl, ChangeType ct) voidChangeable.removeChangeListener(ChangeListener cl, ChangeType ct) Remove a listener that was interested in a specific types of changes.voidChangeSupport.removeChangeListener(ChangeListener cl, ChangeType ct) Remove a listener that was interested in a specific types of changes.final voidUnchangeable.removeChangeListener(ChangeListener cl, ChangeType ct) final voidUnchangeable.removeForwarder(ChangeForwarder cf, ChangeType ct) voidChangeHub.removeListener(Object key, ChangeListener listener, ChangeType ct) remove a ChangeListener associated with given key.voidIndexedChangeHub.removeListener(Object key, ChangeListener listener, ChangeType ct) Constructors in org.biojava.utils with parameters of type ChangeTypeModifierConstructorDescriptionChangeEvent(Object source, ChangeType type) Construct a ChangeEvent with no change details.ChangeEvent(Object source, ChangeType type, Object change) Construct a ChangeEvent specifying a new value for a property, or an object to be added to a collection.ChangeEvent(Object source, ChangeType type, Object change, Object previous) Construct a ChangeEvent specifying a new value for a property, and giving the previous value.ChangeEvent(Object source, ChangeType type, Object change, Object previous, ChangeEvent chain) Construct a ChangeEvent to be fired because another ChangeEvent has been received from a property object.ChangeType(String name, Class clazz, String fname, ChangeType superType) Construct a new ChangeType.ChangeType(String name, Field ourField, ChangeType superType) Construct a new ChangeType.ChangeType(String name, String className, String fieldName, ChangeType superType) ListenerMemento(ChangeType type, Reference listener) Retyper(Object source, ChangeSupport changeSupport, ChangeType type) Create a new Retyper for forwarding events. -
Uses of ChangeType in org.biojava.utils.cache
Constructors in org.biojava.utils.cache with parameters of type ChangeType -
Uses of ChangeType in org.biojavax
Fields in org.biojavax declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeNamespace.ACRONYMstatic final ChangeTypeNamespace.AUTHORITYstatic final ChangeTypeDocRef.CROSSREFstatic final ChangeTypeNamespace.DESCRIPTIONstatic final ChangeTypeRankedDocRef.LOCATIONstatic final ChangeTypeNamespace.NAMEstatic final ChangeTypeComment.RANKstatic final ChangeTypeNote.RANKstatic final ChangeTypeRankedCrossRef.RANKstatic final ChangeTypeRankedDocRef.RANKstatic final ChangeTypeDocRef.REMARKstatic final ChangeTypeNote.TERMstatic final ChangeTypeNamespace.URIstatic final ChangeTypeNote.VALUE -
Uses of ChangeType in org.biojavax.bio
Fields in org.biojavax.bio declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeBioEntry.COMMENTstatic final ChangeTypeBioEntry.DESCRIPTIONstatic final ChangeTypeBioEntry.DIVISIONstatic final ChangeTypeBioEntry.IDENTIFIERstatic final ChangeTypeBioEntryRelationship.RANKstatic final ChangeTypeBioEntry.RANKEDCROSSREFstatic final ChangeTypeBioEntry.RANKEDDOCREFstatic final ChangeTypeBioEntry.RELATIONSstatic final ChangeTypeBioEntry.SEQVERSIONstatic final ChangeTypeBioEntry.TAXON -
Uses of ChangeType in org.biojavax.bio.db
Fields in org.biojavax.bio.db declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeBioEntryDBLite.BIOENTRYSSignals that sequences are being added to or remove from the database. -
Uses of ChangeType in org.biojavax.bio.seq
Fields in org.biojavax.bio.seq declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeRichLocation.CIRCULARstatic final ChangeTypeRichSequence.CIRCULARstatic final ChangeTypeRichFeature.CROSSREFstatic final ChangeTypeRichLocation.FEATUREstatic final ChangeTypeRichFeature.LOCATIONstatic final ChangeTypeRichFeature.NAMEstatic final ChangeTypeRichLocation.NOTEstatic final ChangeTypeRichFeature.PARENTstatic final ChangeTypeRichFeature.RANKstatic final ChangeTypeRichFeatureRelationship.RANKstatic final ChangeTypeRichLocation.RANKstatic final ChangeTypeRichFeature.RELATIONstatic final ChangeTypeRichFeature.SOURCETERMstatic final ChangeTypeRichSequence.SYMLISTVERSIONstatic final ChangeTypeRichLocation.TERMstatic final ChangeTypeRichFeature.TYPETERMMethods in org.biojavax.bio.seq with parameters of type ChangeTypeModifier and TypeMethodDescriptionvoidInfinitelyAmbiguousSymbolList.addChangeListener(ChangeListener cl, ChangeType ct) Add a listener that will be informed of changes of a given type.booleanInfinitelyAmbiguousSymbolList.isUnchanging(ChangeType ct) A particular ChangeType can never be raised by this Changeable.voidInfinitelyAmbiguousSymbolList.removeChangeListener(ChangeListener cl, ChangeType ct) Remove a listener that was interested in a specific types of changes. -
Uses of ChangeType in org.biojavax.bio.taxa
Fields in org.biojavax.bio.taxa declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeNCBITaxon.GENETICCODEstatic final ChangeTypeNCBITaxon.HIDDENstatic final ChangeTypeNCBITaxon.LEFTVALUEstatic final ChangeTypeNCBITaxon.MITOGENETICCODEstatic final ChangeTypeNCBITaxon.NAMESstatic final ChangeTypeNCBITaxon.NODERANKstatic final ChangeTypeNCBITaxon.PARENTstatic final ChangeTypeNCBITaxon.RIGHTVALUE -
Uses of ChangeType in org.biojavax.ga
Fields in org.biojavax.ga declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeOrganism.CHROMOSOMESstatic final ChangeTypeGeneticAlgorithm.CROSS_OVER_FUNCTIONstatic final ChangeTypeGeneticAlgorithm.FITNESS_FUNCTIONstatic final ChangeTypeGeneticAlgorithm.FUNCTIONstatic final ChangeTypeGeneticAlgorithm.MUTATION_FUNCTIONstatic final ChangeTypeOrganism.NAMEstatic final ChangeTypePopulation.NAMEstatic final ChangeTypePopulation.ORGANISMSstatic final ChangeTypeGeneticAlgorithm.POPULATIONstatic final ChangeTypeGeneticAlgorithm.SELECTION_FUNCTION -
Uses of ChangeType in org.biojavax.ga.functions
Fields in org.biojavax.ga.functions declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeCrossOverFunction.CROSS_PROBstatic final ChangeTypeCrossOverFunction.MAX_CROSSESstatic final ChangeTypeMutationFunction.MUTATION_PROBSstatic final ChangeTypeMutationFunction.MUTATION_SPECTRUMMethods in org.biojavax.ga.functions with parameters of type ChangeTypeModifier and TypeMethodDescriptionvoidCrossOverFunction.NoCross.addChangeListener(ChangeListener cl, ChangeType ct) voidMutationFunction.NoMutation.addChangeListener(ChangeListener cl, ChangeType ct) booleanCrossOverFunction.NoCross.isUnchanging(ChangeType t) booleanMutationFunction.NoMutation.isUnchanging(ChangeType ct) voidCrossOverFunction.NoCross.removeChangeListener(ChangeListener cl, ChangeType ct) voidMutationFunction.NoMutation.removeChangeListener(ChangeListener cl, ChangeType ct) -
Uses of ChangeType in org.biojavax.ontology
Fields in org.biojavax.ontology declared as ChangeTypeModifier and TypeFieldDescriptionstatic final ChangeTypeComparableOntology.DESCRIPTIONstatic final ChangeTypeComparableTerm.DESCRIPTIONstatic final ChangeTypeComparableTriple.DESCRIPTORstatic final ChangeTypeComparableTerm.IDENTIFIERstatic final ChangeTypeComparableTerm.OBSOLETEstatic final ChangeTypeComparableTerm.RANKEDCROSSREFstatic final ChangeTypeComparableOntology.TERMstatic final ChangeTypeComparableOntology.TRIPLE