Uses of Class
org.biojava.utils.ParseErrorEvent
Packages that use ParseErrorEvent
Package
Description
Parser for Phred output
Classes and interfaces for processing and producing flat-file representations
of sequences.
Miscellaneous utility classes used by other BioJava components.
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Uses of ParseErrorEvent in org.biojava.bio.program.phred
Methods in org.biojava.bio.program.phred with parameters of type ParseErrorEventModifier and TypeMethodDescriptionvoidPhredFormat.BadLineParsed(ParseErrorEvent theEvent) This method determines the behaviour when a bad line is processed.protected voidPhredFormat.notifyParseErrorEvent(ParseErrorEvent theEvent) Passes the event on to all the listeners registered for ParseErrorEvents. -
Uses of ParseErrorEvent in org.biojava.bio.seq.io
Methods in org.biojava.bio.seq.io with parameters of type ParseErrorEventModifier and TypeMethodDescriptionvoidEmblLikeFormat.BadLineParsed(ParseErrorEvent theEvent) Deprecated.This method determines the behaviour when a bad line is processed.voidFastaFormat.BadLineParsed(ParseErrorEvent theEvent) Deprecated.This method determines the behaviour when a bad line is processed.voidGenbankFormat.BadLineParsed(ParseErrorEvent theEvent) Deprecated.This method determines the behaviour when a bad line is processed.voidStreamReader.BadLineParsed(ParseErrorEvent theEvent) This method determines the behaviour when a bad line is processed.protected voidEmblLikeFormat.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected voidEmblProcessor.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected voidFastaFormat.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected voidGenbankFormat.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected voidGenbankProcessor.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected voidSwissprotProcessor.notifyParseErrorEvent(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents. -
Uses of ParseErrorEvent in org.biojava.utils
Methods in org.biojava.utils with parameters of type ParseErrorEventModifier and TypeMethodDescriptionvoidParseErrorListener.BadLineParsed(ParseErrorEvent theEvent) Method called when the parser encounters a bad line.