Uses of Interface
org.biojava.utils.ParseErrorListener
Packages that use ParseErrorListener
Package
Description
Parser for Phred output
Classes and interfaces for processing and producing flat-file representations
of sequences.
Miscellaneous utility classes used by other BioJava components.
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Uses of ParseErrorListener in org.biojava.bio.program.phred
Classes in org.biojava.bio.program.phred that implement ParseErrorListenerModifier and TypeClassDescriptionclassFormat object representing Phred Quality files.Methods in org.biojava.bio.program.phred with parameters of type ParseErrorListenerModifier and TypeMethodDescriptionvoidPhredFormat.addParseErrorListener(ParseErrorListener theListener) Adds a parse error listener to the list of listeners if it isn't already included.voidPhredFormat.removeParseErrorListener(ParseErrorListener theListener) Removes a parse error listener from the list of listeners if it is included. -
Uses of ParseErrorListener in org.biojava.bio.seq.io
Classes in org.biojava.bio.seq.io that implement ParseErrorListenerModifier and TypeClassDescriptionclassDeprecated.Use org.biojavax.bio.seq.io.EMBLFormat insteadclassDeprecated.Use org.biojavax.bio.seq.io.FastaFormatclassDeprecated.Use org.biojavax.bio.seq.io.GenbankFormatclassDeprecated.Use org.biojavax.bio.seq.io.INSDseqFormatclassDeprecated.Use org.biojavax.bio.seq.io framework insteadclassParses a stream into sequences.Methods in org.biojava.bio.seq.io with parameters of type ParseErrorListenerModifier and TypeMethodDescriptionvoidEmblLikeFormat.addParseErrorListener(ParseErrorListener theListener) Deprecated.Adds a parse error listener to the list of listeners if it isn't already included.voidEmblProcessor.addParseErrorListener(ParseErrorListener theListener) Deprecated.Adds a parse error listener to the list of listeners if it isn't already included.voidFastaFormat.addParseErrorListener(ParseErrorListener theListener) Deprecated.Adds a parse error listener to the list of listeners if it isn't already included.voidGenbankFormat.addParseErrorListener(ParseErrorListener theListener) Deprecated.Adds a parse error listener to the list of listeners if it isn't already included.voidGenbankProcessor.addParseErrorListener(ParseErrorListener theListener) Deprecated.Adds a parse error listener to the list of listeners if it isn't already included.voidSwissprotProcessor.addParseErrorListener(ParseErrorListener theListener) Deprecated.Adds a parse error listener to the list of listeners if it isn't already included.voidEmblLikeFormat.removeParseErrorListener(ParseErrorListener theListener) Deprecated.Removes a parse error listener from the list of listeners if it is included.voidEmblProcessor.removeParseErrorListener(ParseErrorListener theListener) Deprecated.Removes a parse error listener from the list of listeners if it is included.voidFastaFormat.removeParseErrorListener(ParseErrorListener theListener) Deprecated.Removes a parse error listener from the list of listeners if it is included.voidGenbankFormat.removeParseErrorListener(ParseErrorListener theListener) Deprecated.Removes a parse error listener from the list of listeners if it is included.voidGenbankProcessor.removeParseErrorListener(ParseErrorListener theListener) Deprecated.Removes a parse error listener from the list of listeners if it is included.voidSwissprotProcessor.removeParseErrorListener(ParseErrorListener theListener) Deprecated.Removes a parse error listener from the list of listeners if it is included. -
Uses of ParseErrorListener in org.biojava.utils
Methods in org.biojava.utils with parameters of type ParseErrorListenerModifier and TypeMethodDescriptionvoidParseErrorSource.addParseErrorListener(ParseErrorListener theListener) Adds a parse error listener to the list of listeners.voidParseErrorSource.removeParseErrorListener(ParseErrorListener theListener) Removes a parse error listener from the list of listeners.