Uses of Class
org.biojava.utils.Unchangeable
Packages that use Unchangeable
Package
Description
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
Classes and interfaces for defining biological sequences and informatics
objects.
Client for the OBDA BioFetch protocol.
Support for OBDA flatfile databases.
The classes and interfaces for defining sequence similarity and
honology.
Standard in-memory implementations of
Sequence and
Feature.Classes and interfaces for processing and producing flat-file representations
of sequences.
Representation of the Symbols that make up a sequence, and locations within
them.
A general-purpose API for ontologies.
The Biojava extensions packages, classes that extend the core biojava
functionality
Rich implementations of Sequences, Locations and Features.
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Uses of Unchangeable in org.biojava.bio.dist
Subclasses of Unchangeable in org.biojava.bio.dist -
Uses of Unchangeable in org.biojava.bio.dp
Subclasses of Unchangeable in org.biojava.bio.dp -
Uses of Unchangeable in org.biojava.bio.seq
Subclasses of Unchangeable in org.biojava.bio.seqModifier and TypeClassDescriptionclassA circular view onto another Sequence object.static final class -
Uses of Unchangeable in org.biojava.bio.seq.db.biofetch
Subclasses of Unchangeable in org.biojava.bio.seq.db.biofetchModifier and TypeClassDescriptionclassSimple SequenceDB implementation backed by a BioFetch (HTTP) server. -
Uses of Unchangeable in org.biojava.bio.seq.db.flat
Subclasses of Unchangeable in org.biojava.bio.seq.db.flatModifier and TypeClassDescriptionclassFlatSequenceDBis an OBDA flatfile sequence databank implementation. -
Uses of Unchangeable in org.biojava.bio.seq.homol
Subclasses of Unchangeable in org.biojava.bio.seq.homolModifier and TypeClassDescriptionstatic final classEmptyPairwiseAlignmentempty pairwise alignment which has labels to empty symbol lists. -
Uses of Unchangeable in org.biojava.bio.seq.impl
Subclasses of Unchangeable in org.biojava.bio.seq.impl -
Uses of Unchangeable in org.biojava.bio.seq.io
Subclasses of Unchangeable in org.biojava.bio.seq.ioModifier and TypeClassDescriptionclassImplementation of SymbolTokenization which binds symbols to strings of characters.classImplementation of SymbolTokenization which binds symbols to single unicode characters.classTokenization for cross-product alphabets.classclassclassSimple implementation of SymbolTokenization which uses the `name' field of the symbols.classclassBase class for tokenizations which accept whitespace-separated `words'. -
Uses of Unchangeable in org.biojava.bio.symbol
Subclasses of Unchangeable in org.biojava.bio.symbolModifier and TypeClassDescriptionfinal classAn efficient implementation of an Alphabet over the infinite set of double values.static classA range of double values.static classA single double value.static classA class to represent a contiguous range of double symbols.final classAn efficient implementation of an Alphabet over the infinite set of integer values.static classA single int value.classAn alignment that relabels another alignment.final classSoft masking is usually displayed by making the masked regions somehow different from the non masked regions.classThisSymbolTokenizerworks with a delegate to softmask symbol tokenization as appropriate. -
Uses of Unchangeable in org.biojava.ontology
Subclasses of Unchangeable in org.biojava.ontologyModifier and TypeClassDescriptionclassfinal classstatic final classBasic in-memory implementation of a Triple in an ontology This can be used to implement Ontology.createTriple -
Uses of Unchangeable in org.biojavax
Subclasses of Unchangeable in org.biojavaxModifier and TypeClassDescriptionclassA place holder for a RichAnnotation that prevents null having to be usedclassA basic CrossRef implementation.classRepresents an author of a documentary reference. -
Uses of Unchangeable in org.biojavax.bio.seq
Subclasses of Unchangeable in org.biojavax.bio.seqModifier and TypeClassDescriptionclassAn Empty implementation of RichLocation.