java.lang.Object

org.biojava.utils.io.LargeBuffer

public class LargeBuffer extends Object

Wrapper arround MappedByteBuffers to allow long-indexed access to files larger than 2 gigs.

Author:: Matthews Pocock

Constructor Summary

Constructors

Constructor

Description

LargeBuffer(FileChannel channel, FileChannel.MapMode mode, long pos, long size)
Method Summary

Modifier and Type

Method

Description

void

force()

byte

get()

byte

get(long pos)

char

getChar()

char

getChar(long pos)

double

getDouble()

double

getDouble(long pos)

float

getFloat()

float

getFloat(long pos)

int

getInt()

int

getInt(long pos)

long

getLong()

long

getLong(long pos)

short

getShort()

short

getShort(long pos)

long

position()

void

position(long pos)

void

put(byte val)

void

put(long pos, byte b)

void

putChar(char val)

void

putChar(long pos, char c)

void

putDouble(double val)

void

putDouble(long pos, double d)

void

putFloat(float val)

void

putFloat(long pos, float f)

void

putInt(int val)

void

putInt(long pos, int i)

void

putLong(long val)

void

putLong(long pos, long l)

void

putShort(long pos, short s)

void

putShort(short val)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- LargeBuffer
  
  public LargeBuffer(FileChannel channel, FileChannel.MapMode mode, long pos, long size) throws IOException
  
  Throws:
  
  IOException
Method Details
- get
  
  public byte get(long pos) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- get
  
  public byte get() throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- put
  
  public void put(long pos, byte b) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- put
  
  public void put(byte val) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getChar
  
  public char getChar(long pos) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getChar
  
  public char getChar() throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putChar
  
  public void putChar(long pos, char c) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putChar
  
  public void putChar(char val) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getDouble
  
  public double getDouble(long pos) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getDouble
  
  public double getDouble() throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putDouble
  
  public void putDouble(long pos, double d) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putDouble
  
  public void putDouble(double val) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getFloat
  
  public float getFloat(long pos) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getFloat
  
  public float getFloat() throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putFloat
  
  public void putFloat(long pos, float f) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putFloat
  
  public void putFloat(float val) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getInt
  
  public int getInt(long pos) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getInt
  
  public int getInt() throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putInt
  
  public void putInt(long pos, int i) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putInt
  
  public void putInt(int val) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getLong
  
  public long getLong(long pos) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getLong
  
  public long getLong() throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putLong
  
  public void putLong(long pos, long l) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putLong
  
  public void putLong(long val) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getShort
  
  public short getShort(long pos) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- getShort
  
  public short getShort() throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putShort
  
  public void putShort(long pos, short s) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- putShort
  
  public void putShort(short val) throws IndexOutOfBoundsException, IOException
  
  Throws:
  
  IndexOutOfBoundsException
  
  IOException
- position
  
  public long position()
- position
  
  public void position(long pos)
- force
  
  public void force()

Class LargeBuffer

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Details

LargeBuffer

Method Details

get

get

put

put

getChar

getChar

putChar

putChar

getDouble

getDouble

putDouble

putDouble

getFloat

getFloat

putFloat

putFloat

getInt

getInt

putInt

putInt

getLong

getLong

putLong

putLong

getShort

getShort

putShort

putShort

position

position

force