Package org.biojava.utils.io

package org.biojava.utils.io
I/O utility classes.
  • Class
    Description
    CachingInputStream
    A wrapper around InputStream that provides in-memory caching of the input data.
    CountedBufferedReader
     
    FlatFileCache
    Provides a cache for storing multiple small files in memory.
    InputStreamProvider
    A class that provides an InputStream from a File.
    LargeBuffer
    Wrapper arround MappedByteBuffers to allow long-indexed access to files larger than 2 gigs.
    RAF
     
    RandomAccessReader
    RandomAccessReader extends Reader to provide a means to create buffered Readers from RandomAccessFiles.
    Seekable
    This interface provides a collective name for IO classes that implement a seek function (e.g., RandomAccessFile).
    SoftHashMap
    A in memory cache using soft references.
    UncompressInputStream
    This class decompresses an input stream containing data compressed with the unix "compress" utility (LZC, a LZW variant).