Uses of Class
org.biojava.utils.stax.StAXContentHandlerBase
Packages that use StAXContentHandlerBase
Package
Description
Parsers for the XML output from NCBI blast.
Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
Event-driven parsing system for the Extensible Feature Format (XFF).
Tools for reading and writing an XML representation of BioJava's FeatureFilter language.
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
The Stack API for XML (StAX).
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Uses of StAXContentHandlerBase in org.biojava.bio.program.sax.blastxml
Subclasses of StAXContentHandlerBase in org.biojava.bio.program.sax.blastxml -
Uses of StAXContentHandlerBase in org.biojava.bio.program.ssbind
Subclasses of StAXContentHandlerBase in org.biojava.bio.program.ssbindModifier and TypeClassDescriptionclassAlignmentStAXHandlerhandles the BlastLikeAlignment element of BioJava BlastLike XML.classHeaderStAXHandlerhandles the Header element of BioJava BlastLike XML.classAlignmentStAXHandlerhandles the Hit element of BioJava BlastLike XML.classHSPStAXHandlerhandles the HSP element of BioJava BlastLike XML.classHSPSummaryStAXHandlerhandles the HSPSummary element of BioJava BlastLike XML.classSeqSimilarityStAXAdapteris a handler for XML conforming to the BioJava BlastLike DTD.classSeqSimilarityStAXHandleris a base class for creating modular StAX handlers which send callbacks to aSeqSimilarityStAXAdapter. -
Uses of StAXContentHandlerBase in org.biojava.bio.program.xff
Subclasses of StAXContentHandlerBase in org.biojava.bio.program.xffModifier and TypeClassDescriptionclassStAX handler for the basicfeaturetype of XFF.classHandler to the XFF location type.classStAX handler for xff:prop detail elements.classStAX handler for XFF strandedFeature type.classStAX handler which converts and stream of parse events for an XFF featureSet element into BioJava SeqIO events.Methods in org.biojava.bio.program.xff that return StAXContentHandlerBaseModifier and TypeMethodDescriptionXFFFeatureSetHandler.getDetailsHandler()Return a handler for the XFFdetailselement. -
Uses of StAXContentHandlerBase in org.biojava.bio.seq.io.filterxml
Subclasses of StAXContentHandlerBase in org.biojava.bio.seq.io.filterxmlModifier and TypeClassDescriptionclassStAX handler for parsing AnnotationTypes in FilterXML documents. -
Uses of StAXContentHandlerBase in org.biojava.bio.seq.io.game
Subclasses of StAXContentHandlerBase in org.biojava.bio.seq.io.gameModifier and TypeClassDescriptionclassHandles the GAME <annotation> elementclassHandles the GAME <aspect> elementclassDeals with database crossreferencesclassStAX handler for GAME <description> elements.classHandles the <feature_set> elementclassHandles the GAMEelement classHandles the <feature_span> elementclassHandles the GAME <gene> elementclassHandles the root GAME elementclassHandles the GAME <map_position> element Currently, it just ignores it!classStAX handler for the GAME <name> element.classStAX handler for GAME <residues> elements.classHandles the GAME <seq> elementclassHandles the GAME <aspect> elementclassHandles the GAME <span> element Currently, it just ignores it!classStAX handler for GAME <type> elements.classStAX handler for elements containing sequenceclassStAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler.classStAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler. -
Uses of StAXContentHandlerBase in org.biojava.bio.seq.io.game12
Subclasses of StAXContentHandlerBase in org.biojava.bio.seq.io.game12Modifier and TypeClassDescriptionclassHandles the GAME <annotation> elementclassHandles the GAME <aspect> elementclassHandles the GAME <dbxref> elementclassHandles the GAME <feature_set> element this element is used to represent transcripts.classHandles the GAME <feature_span> elementclassclassHandles the GAME <annotation> elementclassHandles the root GAME elementclassHandles the GAME <dbxref> elementclassHandles the GAME <seq> elementclassHandles the GAME <> element classHandles the GAME <> element.classStAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler. -
Uses of StAXContentHandlerBase in org.biojava.utils.stax
Subclasses of StAXContentHandlerBase in org.biojava.utils.staxModifier and TypeClassDescriptionclassStAX handler for any element which just contains a string representation of an boolean.classStAX handler for any element which just contains a string representation of a byte.classStAX handler for any element which just contains a string representation of a char.classStAX handler for any element which just contains a string representation of a double.classStAX handler for any element which just contains a string representation of a float.classStAX handler for any element which just contains a string representation of an integer.classStAX handler for any element which just contains a string representation of a long.classStAX handler for any element which just contains a string.