Package org.biojavax

Class DummyCrossReferenceResolver

java.lang.Object
org.biojavax.DummyCrossReferenceResolver
All Implemented Interfaces:
CrossReferenceResolver
public class DummyCrossReferenceResolver extends Object implements CrossReferenceResolver
A simple implementation of CrossReferenceResolver.
Since:
1.5
Author:
Richard Holland, Mark Schreiber

  • Constructor Details

  • Method Details

    • getRemoteSymbolList

      public SymbolList getRemoteSymbolList(CrossRef cr, Alphabet a)
      Given a cross reference, return the corresponding symbol list. All responses are instances of InfinitelyAmbiguousSymbolList.
      Specified by:
      getRemoteSymbolList in interface CrossReferenceResolver
      Parameters:
      cr - the cross reference to look up.
      a - the alphabet to construct the infinitely ambiguous symbol list over if it cannot be found.
      Returns:
      the symbol list matching it. If none, return an infintely-ambiguous symbol list rather than null.

    • getRemoteBioEntry

      public BioEntry getRemoteBioEntry(CrossRef cr)
      Given the CrossRef return the corresponding BioEntry All responses are null.
      Specified by:
      getRemoteBioEntry in interface CrossReferenceResolver
      Parameters:
      cr - the cross reference
      Returns:
      The cross referenced entry (most likely a RichSequence or null if it cannot be found.