Uses of Interface
org.biojavax.bio.db.BioEntryDB
Packages that use BioEntryDB
Package
Description
Interactions between biojavax objects and a DB.
Interface between biojava and biosql databases
Interfaces to NCBI data.
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Uses of BioEntryDB in org.biojavax.bio.db
Subinterfaces of BioEntryDB in org.biojavax.bio.dbModifier and TypeInterfaceDescriptioninterfaceA database of RichSequences with accessible keys and iterators over all sequences.Classes in org.biojavax.bio.db that implement BioEntryDBModifier and TypeClassDescriptionclassAn abstract implementation of BioEntryDB that provides the getBioEntryIterator method.classAn abstract implementation of RichSequenceDB that provides the getRichSequenceIterator method.classAn implementation of RichSequenceDB that uses an underlying HashMap to store the RichSequence objects.classAn implementation of RichSequenceDB that uses an underlying HashMap to store the RichSequence objects.Methods in org.biojavax.bio.db that return BioEntryDBModifier and TypeMethodDescriptionAbstractRichSequenceDB.getBioEntrys(Set ids) AbstractRichSequenceDB.getBioEntrys(Set ids, BioEntryDB db) BioEntryDBLite.getBioEntrys(Set ids) Retrieve multiple BioEntry by their ids.BioEntryDBLite.getBioEntrys(Set ids, BioEntryDB db) Retrieve multiple BioEntry into a specific sequence database.HashBioEntryDB.getBioEntrys(Set ids) HashBioEntryDB.getBioEntrys(Set ids, BioEntryDB db) Methods in org.biojavax.bio.db with parameters of type BioEntryDBModifier and TypeMethodDescriptionAbstractRichSequenceDB.getBioEntrys(Set ids, BioEntryDB db) BioEntryDBLite.getBioEntrys(Set ids, BioEntryDB db) Retrieve multiple BioEntry into a specific sequence database.HashBioEntryDB.getBioEntrys(Set ids, BioEntryDB db) -
Uses of BioEntryDB in org.biojavax.bio.db.biosql
Classes in org.biojavax.bio.db.biosql that implement BioEntryDBMethods in org.biojavax.bio.db.biosql that return BioEntryDBModifier and TypeMethodDescriptionBioSQLBioEntryDB.getBioEntrys(Set ids) BioSQLBioEntryDB.getBioEntrys(Set ids, BioEntryDB db) Methods in org.biojavax.bio.db.biosql with parameters of type BioEntryDB -
Uses of BioEntryDB in org.biojavax.bio.db.ncbi
Classes in org.biojavax.bio.db.ncbi that implement BioEntryDBModifier and TypeClassDescriptionclassThis class contains functions accessing DNA sequences in Genbank format.classThis class contains functions accessing Peptide sequences in Genpept format.