Class CharactersBlockBuilder

Method Details

• addComment

  protected void addComment(NexusComment comment)

  Description copied from class: NexusBlockBuilder.Abstract

  Tell the builder to add the given comment at the current location.

  Specified by:

  addComment in class NexusBlockBuilder.Abstract

  Parameters:

  comment - the comment to add.

• makeNewBlock

  protected CharactersBlock makeNewBlock()

• startBlockObject

  protected NexusBlock startBlockObject()

  Description copied from class: NexusBlockBuilder.Abstract

  Tell the builder to start a new block object.

  Specified by:

  startBlockObject in class NexusBlockBuilder.Abstract

• resetStatus

  protected void resetStatus()

  Allowed to be called by DATA subclass.

• endBlock

  public void endBlock()

  Description copied from interface: NexusBlockListener

  Notifies the parser that a block is ending.

  Specified by:

  endBlock in interface NexusBlockListener

• endTokenGroup

  public void endTokenGroup()

  Description copied from interface: NexusBlockListener

  Closing a line (semi-colon encountered). This indicates that anything received after it is on the next logical line of the block.

  Specified by:

  endTokenGroup in interface NexusBlockListener

• addCharLabel

  public void addCharLabel(String charLabel)

  Specified by:

  addCharLabel in interface CharactersBlockListener

• addCharState

  public void addCharState(String charState)

  Specified by:

  addCharState in interface CharactersBlockListener

• addCharStateKeyword

  public void addCharStateKeyword(String charState, String keyword)

  Specified by:

  addCharStateKeyword in interface CharactersBlockListener

• addEquate

  public void addEquate(String symbol, List symbols)

  Specified by:

  addEquate in interface CharactersBlockListener

• addItem

  public void addItem(String item)

  Specified by:

  addItem in interface CharactersBlockListener

• addMatrixEntry

  public void addMatrixEntry(String taxa)

  Specified by:

  addMatrixEntry in interface CharactersBlockListener

• addState

  public void addState(String state)

  Specified by:

  addState in interface CharactersBlockListener

• addStateLabel

  public void addStateLabel(String state, String label)

  Specified by:

  addStateLabel in interface CharactersBlockListener

• addSymbol

  public void addSymbol(String symbol)

  Specified by:

  addSymbol in interface CharactersBlockListener

• addTaxLabel

  public void addTaxLabel(String taxLabel) throws ParseException

  Description copied from interface: CharactersBlockListener

  Add a TAXLABEL. If it already exists, or is a number that refers to an index position that already exists, an exception is thrown.

  Specified by:

  addTaxLabel in interface CharactersBlockListener

  Parameters:

  taxLabel - the label to add.

  Throws:

  ParseException - if the label cannot be added.

• appendMatrixData

  public void appendMatrixData(String taxa, Object data)

  Specified by:

  appendMatrixData in interface CharactersBlockListener

• setCharStateLabel

  public void setCharStateLabel(String charState, String label)

  Specified by:

  setCharStateLabel in interface CharactersBlockListener

• setDataType

  public void setDataType(String dataType)

  Specified by:

  setDataType in interface CharactersBlockListener

• setDimensionsNChar

  public void setDimensionsNChar(int dimensionsNChar)

  Description copied from interface: CharactersBlockListener

  Set the NCHAR value.

  Specified by:

  setDimensionsNChar in interface CharactersBlockListener

  Parameters:

  dimensionsNChar - the NCHAR value.

• setDimensionsNTax

  public void setDimensionsNTax(int dimensionsNTax)

  Description copied from interface: CharactersBlockListener

  Set the NTAX value.

  Specified by:

  setDimensionsNTax in interface CharactersBlockListener

  Parameters:

  dimensionsNTax - the NTAX value.

• setEliminateEnd

  public void setEliminateEnd(int eliminateEnd)

  Specified by:

  setEliminateEnd in interface CharactersBlockListener

• setEliminateStart

  public void setEliminateStart(int eliminateStart)

  Specified by:

  setEliminateStart in interface CharactersBlockListener

• setGap

  public void setGap(String gap)

  Specified by:

  setGap in interface CharactersBlockListener

• setInterleaved

  public void setInterleaved(boolean interleaved)

  Specified by:

  setInterleaved in interface CharactersBlockListener

• setLabels

  public void setLabels(boolean labels)

  Specified by:

  setLabels in interface CharactersBlockListener

• setMatchChar

  public void setMatchChar(String matchChar)

  Specified by:

  setMatchChar in interface CharactersBlockListener

• setMissing

  public void setMissing(String missing)

  Specified by:

  setMissing in interface CharactersBlockListener

• setRespectCase

  public void setRespectCase(boolean respectCase)

  Specified by:

  setRespectCase in interface CharactersBlockListener

• setStatesFormat

  public void setStatesFormat(String statesFormat)

  Specified by:

  setStatesFormat in interface CharactersBlockListener

• setTokens

  public void setTokens(boolean tokens)

  Specified by:

  setTokens in interface CharactersBlockListener

• setTransposed

  public void setTransposed(boolean transposed)

  Specified by:

  setTransposed in interface CharactersBlockListener