Class DistancesBlockBuilder

Method Details

• addComment

  protected void addComment(NexusComment comment)

  Description copied from class: NexusBlockBuilder.Abstract

  Tell the builder to add the given comment at the current location.

  Specified by:

  addComment in class NexusBlockBuilder.Abstract

  Parameters:

  comment - the comment to add.

• startBlockObject

  protected NexusBlock startBlockObject()

  Description copied from class: NexusBlockBuilder.Abstract

  Tell the builder to start a new block object.

  Specified by:

  startBlockObject in class NexusBlockBuilder.Abstract

• endBlock

  public void endBlock()

  Description copied from interface: NexusBlockListener

  Notifies the parser that a block is ending.

  Specified by:

  endBlock in interface NexusBlockListener

• endTokenGroup

  public void endTokenGroup()

  Description copied from interface: NexusBlockListener

  Closing a line (semi-colon encountered). This indicates that anything received after it is on the next logical line of the block.

  Specified by:

  endTokenGroup in interface NexusBlockListener

• addMatrixEntry

  public void addMatrixEntry(String taxa)

  Specified by:

  addMatrixEntry in interface DistancesBlockListener

• addTaxLabel

  public void addTaxLabel(String taxLabel) throws ParseException

  Description copied from interface: DistancesBlockListener

  Add a TAXLABEL. If it already exists, or is a number that refers to an index position that already exists, an exception is thrown.

  Specified by:

  addTaxLabel in interface DistancesBlockListener

  Parameters:

  taxLabel - the label to add.

  Throws:

  ParseException - if the label cannot be added.

• appendMatrixData

  public void appendMatrixData(String taxa, Object data)

  Specified by:

  appendMatrixData in interface DistancesBlockListener

• setDimensionsNChar

  public void setDimensionsNChar(int dimensionsNChar)

  Description copied from interface: DistancesBlockListener

  Set the NCHAR value.

  Specified by:

  setDimensionsNChar in interface DistancesBlockListener

  Parameters:

  dimensionsNChar - the NCHAR value.

• setDimensionsNTax

  public void setDimensionsNTax(int dimensionsNTax)

  Description copied from interface: DistancesBlockListener

  Set the NTAX value.

  Specified by:

  setDimensionsNTax in interface DistancesBlockListener

  Parameters:

  dimensionsNTax - the NTAX value.

• setInterleaved

  public void setInterleaved(boolean interleaved)

  Specified by:

  setInterleaved in interface DistancesBlockListener

• setLabels

  public void setLabels(boolean labels)

  Specified by:

  setLabels in interface DistancesBlockListener

• setMissing

  public void setMissing(String missing)

  Specified by:

  setMissing in interface DistancesBlockListener

• setDiagonal

  public void setDiagonal(boolean diagonal)

  Specified by:

  setDiagonal in interface DistancesBlockListener

• setTriangle

  public void setTriangle(String triangle)

  Specified by:

  setTriangle in interface DistancesBlockListener