TaxaBlockParser (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojavax.bio.phylo.io.nexus.NexusBlockParser.Abstract

org.biojavax.bio.phylo.io.nexus.TaxaBlockParser

All Implemented Interfaces:: NexusBlockParser

public class TaxaBlockParser extends NexusBlockParser.Abstract

Parses Nexus taxa blocks.

Since:: 1.6
Author:: Richard Holland, Tobias Thierer, Jim Balhoff

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojavax.bio.phylo.io.nexus.NexusBlockParser
NexusBlockParser.Abstract
Field Summary

Fields inherited from interface org.biojavax.bio.phylo.io.nexus.NexusBlockParser
UNKNOWN_BLOCK
Constructor Summary

Constructors

Constructor

Description

TaxaBlockParser(TaxaBlockListener blockListener)

Delegates to NexusBlockParser.Abstract.
Method Summary

Modifier and Type

Method

Description

void

parseToken(String token)

Notifies the parser of the next token.

void

resetStatus()

This function is called when the parser is reset before starting a new block.

Methods inherited from class org.biojavax.bio.phylo.io.nexus.NexusBlockParser.Abstract
beginComment, commentText, endBlock, endComment, endTokenGroup, getBlockListener, getBlockName, startBlock, wantsBracketsAndBraces

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- TaxaBlockParser
  
  public TaxaBlockParser(TaxaBlockListener blockListener)
  
  Delegates to NexusBlockParser.Abstract.
  
  Parameters:
  
  blockListener - the listener to send parse events to.
Method Details
- resetStatus
  
  public void resetStatus()
  
  Description copied from class: NexusBlockParser.Abstract
  
  This function is called when the parser is reset before starting a new block.
  
  Specified by:
  
  resetStatus in class NexusBlockParser.Abstract
- parseToken
  
  public void parseToken(String token) throws ParseException
  
  Description copied from interface: NexusBlockParser
  
  Notifies the parser of the next token. Comment tokens will already have been parsed out and sent separately to the text() method of the listener. Quoted strings will have been parsed and underscores converted. What this token contains is the full string, after removal of quotes if necessary. The token will never be only whitespace.
  
  Specified by:
  
  parseToken in interface NexusBlockParser
  
  Specified by:
  
  parseToken in class NexusBlockParser.Abstract
  
  Parameters:
  
  token - the token to parse.
  
  Throws:
  
  ParseException - if the token is unparseable.